JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POC5_chr5_75669124_75722437	0/0	c0006	1728	5	0	0	4	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0007	1728	4	0	0	4	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0008	1728	2	0	1	0	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0009	1728	1	0	0	1	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0010	1728	1	0	0	1	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0011	1728	1	1	0	0	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0012	1728	1	0	0	1	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0013	1728	1	0	0	0	0	1	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0014	1728	1	1	0	0	0	0	copy fasta	POC5	chr5	75669124	75722437
PODNL1_chr19_13926187_13943417	1/1	c0001	1725	382	62	75	181	16	46	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0002	1725	11	11	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0003	1725	5	5	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0004	1725	5	4	1	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0005	1725	4	1	0	3	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0006	1725	2	1	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0007	1725	2	0	2	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0008	1725	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0009	1725	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0010	1725	2	0	2	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0011	1725	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0012	1725	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0013	1725	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0014	1725	1	0	1	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0015	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0016	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0017	1725	1	0	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0018	1725	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0019	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0020	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0021	1725	1	0	1	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0022	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0023	1725	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	c0024	1725	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODN_chr1_53057213_53090494	0/0	c0001	1842	80	20	10	44	0	6	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0002	1842	50	4	13	21	4	8	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0003	1842	50	2	16	28	1	3	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	1/1	c0004	1842	44	3	0	35	2	2	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0005	1842	41	5	17	7	3	9	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0006	1842	31	0	0	31	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0007	1842	30	15	7	4	0	4	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0008	1842	22	16	1	5	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0009	1842	19	17	1	0	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0010	1842	10	4	0	1	0	5	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0011	1842	5	1	0	1	0	3	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0012	1842	3	3	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0013	1842	3	0	0	3	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0014	1842	2	2	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0015	1842	2	0	0	2	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0016	1842	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0017	1842	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494