JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARL9_chr4_56500791_56529453	0/1	c0001	798	168	51	25	59	9	23	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0002	798	101	11	26	54	5	5	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0003	794	55	0	1	46	0	8	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0004	801	49	5	6	33	3	2	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0005	798	10	9	1	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0006	796	7	0	6	0	1	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0007	794	6	4	0	2	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0008	798	4	1	2	0	0	1	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0009	798	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0010	798	2	2	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0011	798	2	0	0	2	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0012	796	2	0	0	2	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0013	798	1	0	1	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0014	798	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0015	798	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0016	798	1	0	0	0	0	1	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0017	798	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0018	801	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	0/0	c0019	801	1	1	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARL9_chr4_56500791_56529453	1/0	c0020	798	1	0	0	0	0	0	copy fasta	ARL9	chr4	56500791	56529453
ARMC10_chr7_103070140_103104759	1/1	c0001	1032	301	56	64	140	10	29	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0002	1032	37	1	2	25	2	7	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0003	1032	23	13	7	0	0	3	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0004	1032	9	9	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0005	1032	6	5	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0006	1032	4	3	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0007	1032	2	2	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0008	1032	2	2	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0009	1032	1	0	0	0	0	1	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0010	1032	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0012	1032	1	0	1	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0013	1032	1	1	0	0	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC10_chr7_103070140_103104759	0/0	c0014	1032	1	0	0	1	0	0	copy fasta	ARMC10	chr7	103070140	103104759
ARMC12_chr6_35732032_35754079	0/0	c0001	1023	276	42	65	123	14	32	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	1/1	c0002	1023	114	25	9	63	2	13	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0003	1023	14	14	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0004	1023	7	5	2	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0005	1023	6	0	1	5	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0006	1023	5	5	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0007	1023	2	0	0	0	0	2	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0008	1023	2	0	0	2	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0009	1023	2	2	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0010	1023	2	2	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0012	1023	1	0	1	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0013	1023	1	0	1	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0014	1023	1	1	0	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0015	1023	1	0	1	0	0	0	copy fasta	ARMC12	chr6	35732032	35754079
ARMC12_chr6_35732032_35754079	0/0	c0016	1038	1	0	0	1	0	0	copy fasta	ARMC12	chr6	35732032	35754079