JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PODN_chr1_53057213_53090494	0/0	c0018	1842	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0019	1842	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0020	1842	1	0	0	0	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0021	1842	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0022	1842	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0023	1842	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0024	1842	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	c0025	1842	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODXL2_chr3_127624185_127677802	1/1	c0001	1818	288	48	60	132	14	32	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0002	1818	66	12	10	32	2	10	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0003	1818	21	19	2	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0004	1818	6	4	0	0	0	2	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0005	1812	4	1	1	2	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0006	1818	3	0	0	3	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0007	1818	2	1	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0008	1818	2	2	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0009	1818	2	1	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0010	1818	1	1	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0011	1818	1	0	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0012	1818	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0013	1818	1	0	0	0	1	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0014	1972	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0015	1818	1	1	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0016	1818	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	c0017	1830	1	0	0	0	1	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL_chr7_131495271_131561628	0/1	c0001	1677	70	2	18	43	4	2	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0002	1683	52	1	12	29	2	8	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0003	1683	46	7	11	22	1	5	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0004	1671	40	3	2	27	3	5	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0005	1671	19	12	2	2	0	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0006	1671	18	3	4	8	0	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0007	1677	17	8	3	5	1	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0008	1683	14	0	1	10	0	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0009	1677	13	1	0	8	1	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0010	1677	12	1	9	0	1	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	1/0	c0011	1677	12	4	1	2	1	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0012	1683	12	8	1	1	0	2	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0013	1671	10	0	0	7	0	3	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0014	1665	9	8	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0015	1683	9	0	3	1	1	4	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0016	1683	6	0	1	5	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0017	1677	5	0	0	5	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0018	1665	4	4	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0019	1671	4	4	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0020	1677	4	0	0	3	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0021	1683	4	0	0	4	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0022	1671	4	0	0	4	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0023	1671	4	0	0	2	2	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0024	1671	3	0	0	3	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0025	1677	3	0	1	0	1	1	copy fasta	PODXL	chr7	131495271	131561628