JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PODXL_chr7_131495271_131561628	0/0	c0026	1671	3	1	2	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0027	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0028	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0029	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0030	1677	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0031	1683	2	0	2	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0032	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0033	1671	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0034	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0035	1671	2	1	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0036	1671	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0037	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0038	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0039	1665	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0040	1665	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0041	1665	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0042	1665	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0043	1671	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0044	1671	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0045	1677	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0046	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0047	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0048	1683	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0049	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0050	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0051	1683	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0052	1683	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0053	1683	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0054	1683	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0055	1671	1	0	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0056	1671	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0057	1671	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0058	1671	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	c0059	1671	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
POF1B_chrX_85272396_85384665	0/1	c0001	1770	153	25	19	80	6	22	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0002	1770	33	21	3	7	0	2	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	1/0	c0003	1770	13	5	5	1	1	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0004	1770	9	6	3	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0005	1770	7	6	1	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0006	1770	2	2	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0007	1770	2	2	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0008	1770	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0009	1770	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0010	1770	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0011	1768	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0012	1770	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0013	1770	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0014	1770	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	c0015	1770	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POFUT1_chr20_32202880_32243658	0/1	c0001	1167	242	58	36	128	5	14	copy fasta	POFUT1	chr20	32202880	32243658