JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POFUT1_chr20_32202880_32243658	1/0	c0002	1167	41	4	18	1	3	14	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0003	1167	24	20	4	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0004	1167	6	5	1	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0005	1167	4	0	0	2	0	2	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0006	1167	2	0	1	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0007	1167	1	0	0	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0008	1167	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	c0009	1167	1	1	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT2_chr21_45258935_45292895	1/0	c0001	1290	341	80	60	156	13	31	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/1	c0002	1290	69	1	15	38	3	11	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0003	1290	12	12	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0004	1290	3	3	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0005	1290	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0006	1290	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0007	1290	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0008	1290	1	0	0	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0009	1290	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0010	1290	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0011	1290	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0012	1290	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0013	1290	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0014	1290	1	0	0	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	c0015	1290	1	0	1	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POGK_chr1_166834475_166861359	1/1	c0001	1830	256	76	60	79	15	24	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0002	1830	136	12	13	88	1	22	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0003	1830	6	0	0	6	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0004	1830	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0005	1830	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0006	1830	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0007	1830	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0008	1830	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0009	1830	1	0	1	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	c0010	1830	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGLUT1_chr3_119463963_119499708	1/1	c0001	1179	355	88	57	154	12	42	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0002	1179	55	1	16	29	2	7	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0003	1179	3	0	0	3	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0004	1179	2	0	2	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0005	1179	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0006	1179	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0007	1179	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0008	1179	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0009	1179	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	c0010	1179	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT2_chr13_102779281_102803976	1/1	c0001	1509	221	21	59	92	10	37	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0002	1509	162	49	19	82	4	8	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0003	1509	45	13	3	28	0	1	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0004	1509	4	4	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0005	1509	1	0	0	1	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0006	1509	1	0	1	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	c0007	1509	1	1	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976