JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POGLUT2_chr13_102779281_102803976	0/0	c0008	1509	1	0	0	1	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT3_chr11_108467116_108503384	1/1	c0001	1524	328	82	59	139	12	34	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0002	1524	2	0	0	2	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0003	1524	2	2	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0004	1524	2	0	1	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0005	1524	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0006	1524	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0007	1524	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0008	1524	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0009	1524	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0010	1524	1	0	0	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0011	1524	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0012	1524	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0013	1524	1	0	0	1	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	c0014	1524	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGZ_chr1_151397724_151464494	1/1	c0001	4233	195	48	36	84	9	16	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0002	4233	95	17	16	56	0	6	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0003	4233	8	8	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0004	4233	6	6	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0005	4233	3	0	1	2	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0006	4233	2	0	0	2	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0007	4233	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0008	4233	1	0	0	0	0	1	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0009	4233	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0010	4233	1	0	1	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0011	4233	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0012	4233	1	0	1	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0013	4233	1	0	0	0	0	1	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0014	4233	1	0	1	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0015	4233	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0016	4233	1	0	0	0	1	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	c0017	4233	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POLA1_chrX_24688918_25001986	1/1	c0001	4407	188	62	29	66	9	20	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0002	4407	2	0	1	0	0	1	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0003	4407	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0004	4407	1	0	1	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0005	4407	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0006	4407	1	1	0	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0007	4407	1	0	0	0	0	1	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0008	4407	1	1	0	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	c0009	4410	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA2_chr11_65256962_65303685	1/1	c0001	1797	210	62	35	80	8	23	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0002	1797	55	20	13	12	0	10	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0003	1797	5	0	0	5	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0004	1797	5	4	1	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0005	1797	3	0	0	3	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0006	1797	2	2	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0007	1797	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0008	1797	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	c0009	1797	1	0	1	0	0	0	copy fasta	POLA2	chr11	65256962	65303685