JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLA2_chr11_65256962_65303685	0/0	c0010	1797	1	0	0	0	0	1	copy fasta	POLA2	chr11	65256962	65303685
POLB_chr8_42333494_42376808	1/1	c0001	1008	308	94	46	119	7	40	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	c0002	1008	2	0	1	0	1	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	c0003	1008	2	0	0	2	0	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	c0004	1008	1	0	1	0	0	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	POLB	chr8	42333494	42376808
POLD1_chr19_50379347_50423014	1/1	c0001	3324	191	36	59	57	10	27	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0002	3324	51	14	4	25	0	8	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0003	3324	16	3	6	1	0	6	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0004	3324	10	0	1	9	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0005	3324	8	7	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0006	3324	8	7	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0007	3324	7	7	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0008	3324	6	0	0	6	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0009	3324	6	6	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0010	3324	3	3	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0011	3324	3	2	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0012	3324	3	3	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0013	3324	2	2	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0014	3324	2	0	0	0	2	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0015	3324	2	2	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0016	3324	1	0	0	1	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0017	3324	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0018	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0019	3324	1	0	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0020	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0021	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0022	3324	1	0	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0023	3324	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0024	3324	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0025	3324	1	0	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0026	3324	1	0	0	1	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0027	3324	1	0	0	1	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0028	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0029	3324	1	0	0	0	0	1	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0030	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0031	3324	1	0	0	1	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0032	3324	1	1	0	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	c0033	3324	1	0	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD2_chr7_44109680_44128548	0/0	c0001	1410	410	90	63	194	18	45	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0002	1410	2	0	2	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0003	1410	1	0	1	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0004	1410	1	1	0	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0005	1410	1	0	0	0	0	1	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0006	1410	1	1	0	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0007	1410	1	0	0	1	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	c0008	1410	1	0	0	1	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD3_chr11_74587582_74648076	1/1	c0001	1401	218	37	38	118	10	13	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0002	1401	171	46	35	62	4	24	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0003	1401	5	5	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076