JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLD3_chr11_74587582_74648076	0/0	c0004	1401	2	2	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0005	1401	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0006	1401	1	0	1	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0007	1401	1	0	0	0	0	1	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	c0008	1401	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD4_chr11_67345772_67358546	1/1	c0001	324	297	91	37	137	6	24	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	c0002	324	16	0	15	1	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	c0003	324	1	1	0	0	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLDIP2_chr17_28341633_28362527	1/1	c0001	1107	187	57	37	61	7	23	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0002	1107	148	31	30	63	5	19	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0003	1107	1	0	0	0	0	1	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0004	1107	1	0	1	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0005	1107	1	0	0	0	0	1	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0006	1107	1	1	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	c0007	1107	1	1	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP3_chr22_42578721_42619883	1/1	c0001	1266	315	60	59	143	10	41	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	c0002	1266	34	19	8	0	4	3	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	c0003	1266	8	7	1	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	c0004	1266	2	0	2	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	c0005	1266	1	0	0	1	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLE2_chr14_49638555_49693214	1/1	c0001	1584	168	48	40	49	12	17	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0002	1584	54	39	10	0	2	3	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0003	1584	4	4	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0004	1584	2	2	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0005	1584	2	0	0	2	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0006	1584	1	0	0	1	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0007	1584	1	1	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0008	1584	1	1	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	c0009	1584	1	1	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE3_chr9_113402235_113415675	1/1	c0001	444	350	89	73	123	18	45	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	c0002	444	4	3	1	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	c0003	444	1	0	0	0	0	1	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	c0004	444	1	0	0	1	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE4_chr2_74953643_74975128	1/1	c0001	354	292	59	50	140	10	31	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	c0002	354	170	26	25	99	8	12	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	c0003	357	12	9	3	0	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	c0004	354	1	0	0	1	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	c0005	354	1	0	0	0	0	1	copy fasta	POLE4	chr2	74953643	74975128
POLE_chr12_132618762_132692342	0/0	c0001	6861	96	25	15	41	1	14	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	1/1	c0002	6861	67	9	18	21	3	14	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0003	6861	17	2	5	1	4	5	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0004	6861	14	1	3	9	0	1	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0005	6861	13	4	7	0	2	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0006	6861	13	0	4	7	0	2	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0007	6861	7	6	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0008	6861	6	6	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0009	6861	4	3	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0010	6861	4	4	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0011	6861	3	2	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0012	6861	3	0	0	3	0	0	copy fasta	POLE	chr12	132618762	132692342