JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLE_chr12_132618762_132692342	0/0	c0013	6861	3	0	0	3	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0014	6861	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0015	6861	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0016	6861	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0017	6861	3	0	3	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0018	6861	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0019	6861	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0020	6861	2	2	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0021	6861	2	0	0	1	1	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0022	6861	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0023	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0024	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0025	6861	1	0	0	0	0	1	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0026	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0027	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0028	6861	1	0	0	0	1	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0029	6861	1	0	0	0	0	1	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0030	6861	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0031	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0032	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0033	6861	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0034	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0035	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0036	6861	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0037	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0038	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0039	6861	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0040	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0041	6861	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	c0042	6861	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLG2_chr17_64472785_64502054	1/1	c0001	1458	200	16	32	116	9	25	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0002	1458	76	64	8	0	0	4	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0003	1458	33	7	9	12	3	2	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0004	1458	6	0	0	0	0	6	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0005	1458	4	0	4	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0006	1458	3	3	0	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0007	1458	1	1	0	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0008	1458	1	1	0	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0009	1458	1	0	0	0	0	1	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	c0010	1458	1	0	1	0	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG_chr15_89311320_89339824	1/1	c0001	3720	300	44	54	158	7	35	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0002	3723	33	16	8	1	3	5	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0003	3726	14	12	2	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0004	3720	7	2	5	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0005	3726	6	0	4	0	1	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0006	3720	4	4	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0007	3720	3	1	0	0	2	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0008	3720	3	3	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0009	3720	2	0	0	1	1	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0010	3720	2	0	2	0	0	0	copy fasta	POLG	chr15	89311320	89339824