JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLG_chr15_89311320_89339824	0/0	c0011	3720	2	2	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0012	3720	2	2	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0013	3720	2	2	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0014	3723	2	0	1	0	1	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0015	3708	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0016	3720	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0017	3720	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0018	3720	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0019	3720	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0020	3720	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0021	3720	1	0	0	0	1	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0022	3720	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0023	3720	1	0	0	1	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0024	3720	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0025	3720	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0026	3723	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0027	3723	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0028	3723	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0029	3720	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	c0030	3720	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLH_chr6_43571185_43625523	1/1	c0001	2142	187	43	47	65	12	18	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0002	2142	24	11	3	6	0	4	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0003	2142	21	21	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0004	2142	7	7	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0005	2142	7	0	1	1	2	3	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0006	2142	3	0	0	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0007	2142	3	0	0	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0008	2142	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0009	2142	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0010	2142	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0011	2142	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0012	2142	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0013	2142	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0014	2142	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0015	2142	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	c0016	2142	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLI_chr18_54264517_54303234	0/0	c0001	2220	220	72	40	72	11	25	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	1/1	c0002	2223	79	3	23	40	3	8	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0003	2220	13	8	2	0	0	3	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0004	2220	4	0	0	4	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0005	2223	3	1	1	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0006	2220	3	0	2	0	1	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0007	2220	2	0	0	2	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0008	2220	2	0	0	0	0	2	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0009	2220	2	0	0	0	1	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0010	2223	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0011	2223	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0012	2223	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0013	2223	1	0	0	1	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	c0014	2220	1	0	0	0	0	1	copy fasta	POLI	chr18	54264517	54303234