JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLN_chr4_2066918_2247121	0/0	c0013	2703	1	0	1	0	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0014	2703	1	0	0	1	0	0	copy fasta	POLN	chr4	2066918	2247121
POLN_chr4_2066918_2247121	0/0	c0015	2703	1	0	0	0	0	1	copy fasta	POLN	chr4	2066918	2247121
POLQ_chr3_121426431_121550988	0/0	c0001	7773	95	20	22	39	5	9	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0002	7773	50	9	3	28	1	9	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0003	7773	44	4	13	20	5	2	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0004	7773	15	10	3	0	2	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0005	7773	13	0	3	9	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0006	7773	10	9	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0007	7773	10	2	6	0	1	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0008	7773	7	0	0	6	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0009	7773	6	6	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0010	7773	4	4	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0011	7773	4	0	0	4	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0012	7773	4	3	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0013	7773	3	2	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0014	7773	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0015	7773	3	3	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0016	7773	3	0	2	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0017	7773	3	0	1	0	1	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0018	7773	3	0	3	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0019	7770	3	0	2	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0020	7773	2	0	2	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0021	7773	2	0	0	0	0	2	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0022	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0023	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0024	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0025	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0026	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0027	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0028	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0029	7773	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0030	7773	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0031	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0032	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0033	7773	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0034	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0035	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0036	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0037	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0038	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0039	7773	1	0	0	0	1	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0040	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0041	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0042	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0043	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0044	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0045	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0046	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0047	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988