JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLQ_chr3_121426431_121550988	0/0	c0048	7773	1	0	0	0	0	1	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0049	7773	1	1	0	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0050	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0051	7773	1	0	1	0	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLQ_chr3_121426431_121550988	0/0	c0052	7773	1	0	0	1	0	0	copy fasta	POLQ	chr3	121426431	121550988
POLR1A_chr2_86015216_86110886	0/0	c0001	5163	93	2	29	50	2	10	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/1	c0002	5163	57	4	16	23	4	9	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0003	5163	46	0	4	40	2	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0004	5163	34	0	0	29	1	4	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0005	5163	22	12	0	5	1	4	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0006	5163	17	12	3	0	0	2	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0007	5163	15	15	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0008	5163	6	6	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0009	5163	6	4	2	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0010	5163	5	5	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0011	5163	5	5	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0012	5163	4	3	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0013	5163	3	0	3	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0014	5163	3	3	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	1/0	c0015	5163	2	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0016	5163	2	0	0	0	0	2	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0017	5163	2	2	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0018	5163	2	0	2	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0019	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0020	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0021	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0022	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0023	5163	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0024	5163	1	0	0	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0025	5163	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0026	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0027	5163	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0028	5163	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0029	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0030	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0031	5163	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0032	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0033	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	c0034	5163	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1B_chr2_112537465_112584818	1/0	c0001	3408	197	35	33	115	4	9	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/1	c0002	3408	124	20	24	57	6	16	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0003	3408	15	15	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0004	3408	12	3	3	0	2	4	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0005	3408	9	7	2	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0006	3408	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0007	3408	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0008	3408	3	2	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0009	3408	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0010	3408	2	0	0	2	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0011	3408	2	0	2	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818