JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLR1B_chr2_112537465_112584818	0/0	c0012	3408	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0013	3408	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0014	3408	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0015	3408	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0016	3408	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0017	3408	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0018	3408	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0019	3408	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0020	3408	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0021	3408	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	c0022	3408	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1C_chr6_43512089_43526513	1/1	c0001	1041	357	96	63	140	16	40	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	c0002	1041	20	0	0	20	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	c0003	1041	1	1	0	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	c0004	1041	1	1	0	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	c0005	1041	1	0	1	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1D_chr13_27616892_27628449	1/1	c0001	402	437	94	67	208	16	50	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	c0002	402	1	0	1	0	0	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1E_chr9_37480948_37508697	0/0	c0001	1260	276	52	46	139	7	32	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/1	c0002	1260	88	18	18	40	3	8	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0003	1260	11	10	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0004	1260	11	1	2	1	2	5	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0005	1260	6	0	3	0	0	3	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0006	1260	3	3	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0007	1260	3	2	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0008	1260	3	3	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0009	1260	2	1	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0011	1260	1	1	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	1/0	c0012	1260	1	0	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0013	1260	1	0	0	0	0	1	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	c0014	1260	1	0	0	0	0	1	copy fasta	POLR1E	chr9	37480948	37508697
POLR1F_chr7_19690461_19714037	1/1	c0001	1017	363	69	65	167	14	46	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	c0002	1017	54	16	14	18	2	4	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	c0003	1017	6	0	0	6	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	c0004	1017	5	0	0	5	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	c0005	1017	1	0	1	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	c0006	1017	1	1	0	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1G_chr19_45401644_45415737	1/1	c0001	1533	142	27	29	52	10	22	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0002	1533	136	25	17	80	2	12	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0003	1533	69	19	14	34	0	2	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0004	1530	44	12	12	2	5	13	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0005	1533	5	4	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0006	1533	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0007	1533	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0008	1533	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0009	1533	1	0	0	0	0	1	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0010	1533	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0011	1533	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0012	1533	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737