JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLR1G_chr19_45401644_45415737	0/0	c0013	1572	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0014	1530	1	0	0	0	1	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	c0015	1533	1	0	0	1	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1H_chr6_30056265_30069907	0/1	c0001	381	408	87	77	192	13	38	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	c0002	381	33	5	2	20	5	1	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	c0003	381	4	2	1	0	0	1	copy fasta	POLR1H	chr6	30056265	30069907
POLR2B_chr4_56973896_57036158	0/1	c0001	3525	194	31	44	93	3	22	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0002	3525	122	38	23	43	1	17	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0003	3525	31	10	4	14	2	1	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	1/0	c0004	3525	21	8	5	3	2	2	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0005	3525	4	0	0	4	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0006	3525	3	3	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0007	3525	2	0	0	2	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0008	3525	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0009	3525	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0010	3525	1	0	0	1	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0011	3525	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	c0012	3525	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2C_chr16_57457679_57477009	0/0	c0001	828	267	84	43	99	12	29	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	1/1	c0002	828	122	5	19	81	4	11	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	c0003	828	1	1	0	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2D_chr2_127838553_127863155	1/1	c0001	429	264	66	41	113	10	32	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	c0002	429	53	4	8	28	4	9	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	c0003	429	40	28	6	5	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	c0004	429	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2E_chr19_1081574_1100375	0/1	c0001	633	419	86	82	190	14	46	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0002	633	15	12	3	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0003	633	3	0	2	0	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	1/0	c0004	633	1	0	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0005	633	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0006	650	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0007	633	1	0	1	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	c0008	633	1	0	0	0	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2F_chr22_37948699_37974312	1/1	c0001	384	402	90	74	182	14	40	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	c0002	384	1	1	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	c0003	384	1	1	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2G_chr11_62756580_62771710	1/1	c0001	519	367	88	66	161	12	38	copy fasta	POLR2G	chr11	62756580	62771710
POLR2G_chr11_62756580_62771710	0/0	c0002	519	1	0	0	1	0	0	copy fasta	POLR2G	chr11	62756580	62771710
POLR2H_chr3_184356710_184373591	1/1	c0001	453	378	85	73	156	16	46	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	c0002	453	53	11	7	33	0	2	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	c0003	453	1	0	0	1	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2I_chr19_36108709_36119875	1/1	c0001	378	432	89	77	198	18	48	copy fasta	POLR2I	chr19	36108709	36119875
POLR2I_chr19_36108709_36119875	0/0	c0002	378	6	5	1	0	0	0	copy fasta	POLR2I	chr19	36108709	36119875
POLR2J2_chr7_102661046_102676663	0/0	c0001	348	24	13	4	6	0	1	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	c0002	348	12	1	3	8	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	c0003	348	5	5	0	0	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	c0004	348	5	1	1	2	0	1	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	c0005	348	3	3	0	0	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J2_chr7_102661046_102676663	0/0	c0006	348	3	3	0	0	0	0	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J3_chr7_102561966_102577583	0/0	c0001	348	16	0	1	14	0	1	copy fasta	POLR2J3	chr7	102561966	102577583