JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLR2J3_chr7_102561966_102577583	0/0	c0002	348	14	1	1	10	0	2	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0003	348	13	0	1	12	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0004	348	5	0	0	5	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0005	348	5	0	0	4	0	1	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0006	348	4	2	0	2	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0007	348	4	1	0	3	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0008	348	4	0	0	4	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0009	348	1	0	0	1	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0010	348	1	0	0	1	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	c0011	348	1	0	1	0	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J_chr7_102468128_102483922	1/1	c0001	354	407	87	74	180	18	46	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	c0002	354	3	3	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2K_chr8_100145636_100159003	1/1	c0001	177	430	96	78	190	18	46	copy fasta	POLR2K	chr8	100145636	100159003
POLR2L_chr11_834721_847529	0/0	c0001	204	322	55	64	172	12	19	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	1/1	c0002	204	110	38	18	19	6	27	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	c0003	204	3	3	0	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	c0004	204	1	0	0	1	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2M_chr15_57701714_57722557	1/0	c0001	1107	214	61	29	102	1	20	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/1	c0002	1107	169	21	43	79	9	16	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0003	1107	10	10	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0004	1107	5	0	0	5	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0005	1107	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0006	1107	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0007	1107	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0008	1107	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	c0009	1107	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR3A_chr10_77970149_78034515	1/1	c0001	4173	254	42	47	134	4	25	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0002	4173	57	2	11	34	4	6	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0003	4173	12	12	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0004	4173	8	6	0	0	2	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0005	4173	8	7	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0006	4173	5	5	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0007	4173	4	4	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0008	4173	3	0	0	0	0	3	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0009	4173	3	3	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0010	4173	2	1	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0011	4173	2	2	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0012	4173	2	2	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0013	4173	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0014	4173	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0015	4173	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0016	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0017	4173	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0018	4173	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0019	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0020	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0021	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0022	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0023	4173	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0024	4173	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515