JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLR3A_chr10_77970149_78034515	0/0	c0025	4173	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	c0026	4173	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3B_chr12_106352748_106515198	1/0	c0001	3402	198	84	39	47	10	17	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/1	c0002	3402	81	3	21	42	5	9	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0003	3402	7	0	7	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0004	3402	4	2	0	1	1	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0005	3402	2	0	0	1	0	1	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0006	3402	2	0	0	1	0	1	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0007	3402	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0008	3402	1	0	1	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0009	3402	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0010	3402	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0011	3402	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0012	3402	1	0	0	1	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0013	3402	1	0	0	1	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0014	3402	1	0	0	1	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0015	3402	1	0	0	1	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	c0016	3402	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3C_chr1_145819200_145849402	1/1	c0001	1605	357	80	66	157	18	34	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0002	1605	3	3	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0003	1605	2	0	2	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0004	1605	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0005	1605	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0006	1605	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0007	1605	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0008	1605	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	c0009	1605	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3D_chr8_22240133_22259601	0/0	c0001	1197	286	45	38	155	9	39	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	1/1	c0002	1197	121	47	27	30	9	6	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0003	1197	10	0	6	4	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0004	1197	5	5	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0005	1197	3	0	3	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0006	1197	2	2	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0007	1197	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0008	1197	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0010	1197	1	0	0	0	0	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	c0011	1197	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3E_chr16_22292409_22340096	1/1	c0001	2127	336	92	56	143	9	34	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0002	2127	15	1	3	0	3	8	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0003	2127	2	0	0	0	2	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0004	2127	1	0	1	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0005	2127	1	1	0	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0006	2127	1	0	0	1	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0007	2127	1	0	0	1	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	c0008	2127	1	0	0	1	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3F_chr20_18462390_18489646	0/0	c0001	951	357	71	67	161	17	41	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	1/0	c0002	951	79	21	13	40	1	3	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0003	951	5	0	2	3	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0004	951	2	2	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646