JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLR3F_chr20_18462390_18489646	0/0	c0005	951	2	0	0	0	0	2	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0006	951	1	0	0	0	0	1	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0007	951	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0008	951	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0009	951	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0010	951	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	c0011	951	1	0	0	0	0	1	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/1	c0012	951	1	0	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3GL_chr1_145959690_145983848	1/1	c0001	657	371	90	78	156	8	37	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3GL_chr1_145959690_145983848	0/0	c0002	657	1	0	0	0	0	1	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3G_chr5_90469864_90519557	1/1	c0001	672	365	92	68	151	16	36	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	c0002	672	1	0	0	1	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3H_chr22_41520799_41549470	1/1	c0001	615	368	81	69	164	14	38	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	c0002	615	13	11	2	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	c0003	615	2	1	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	c0004	615	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3K_chr16_41407_58608	0/0	c0001	327	424	97	74	189	18	46	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	c0002	327	6	0	6	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	c0003	327	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	c0004	327	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLRMT_chr19_612221_638537	1/1	c0001	3693	123	15	31	59	10	6	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0002	3693	50	0	6	40	0	4	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0003	3693	49	6	3	31	2	7	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0004	3693	29	9	4	11	0	5	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0005	3693	15	0	0	15	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0006	3693	14	4	4	2	2	2	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0007	3693	13	0	5	0	1	7	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0008	3693	8	8	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0009	3693	7	5	1	0	1	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0010	3693	7	7	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0011	3699	6	6	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0012	3693	6	4	0	2	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0013	3693	6	6	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0014	3693	5	3	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0015	3693	3	3	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0016	3693	3	1	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0017	3693	3	3	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0018	3693	3	0	2	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0019	3693	3	0	1	0	0	2	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0020	3693	2	0	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0021	3693	2	1	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0022	3693	2	0	0	0	0	2	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0023	3693	2	0	0	0	0	2	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0024	3693	2	0	0	0	0	2	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0025	3693	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0026	3693	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0027	3693	2	0	0	2	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0028	3693	2	0	2	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0029	3693	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0030	3693	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537