JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POLRMT_chr19_612221_638537	0/0	c0031	3693	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0032	3694	2	0	0	2	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0033	3699	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0034	3699	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0035	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0036	3699	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0037	3693	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0038	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0039	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0040	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0041	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0042	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0043	3693	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0044	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0045	3693	1	0	0	0	1	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0046	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0047	3694	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0048	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0049	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0050	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0051	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0052	3693	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0053	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0054	3694	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0055	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0056	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0057	3726	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0058	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0059	3694	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0060	3694	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0061	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0062	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0063	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0064	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0065	3693	1	1	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0066	3693	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0067	3694	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0068	3694	1	0	0	0	1	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0069	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0070	3693	1	0	0	0	0	1	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0071	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0072	3677	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0073	3693	1	0	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0074	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	c0075	3693	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POM121C_chr7_75411786_75491299	0/1	c0001	2964	74	3	22	36	4	8	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0002	2964	18	17	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0003	2964	18	15	0	0	1	2	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0004	2964	14	1	2	10	1	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0005	2964	14	2	6	1	3	2	copy fasta	POM121C	chr7	75411786	75491299