JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POM121C_chr7_75411786_75491299	0/0	c0056	2964	1	0	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0057	2964	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0058	2964	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0059	2964	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0060	2964	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0061	2964	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0062	2964	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0063	2964	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	c0064	2964	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121L12_chr7_53030633_53041925	0/0	c0001	891	138	14	38	57	7	22	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/1	c0002	891	136	15	14	82	5	19	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0003	891	66	22	12	26	3	3	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0004	891	41	3	8	27	0	3	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	1/0	c0005	891	11	10	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0006	891	10	9	1	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0007	891	8	8	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0008	891	4	4	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0009	891	3	3	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0010	891	2	0	2	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0011	891	2	2	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0012	891	2	2	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0013	891	2	2	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0014	891	1	1	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0015	891	1	1	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0016	891	1	0	0	0	1	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0017	891	1	0	0	1	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0018	891	1	0	1	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0019	891	1	0	0	1	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	c0020	891	1	0	0	0	0	1	copy fasta	POM121L12	chr7	53030633	53041925
POM121L2_chr6_27303377_27317273	0/0	c0001	3108	153	24	19	89	7	14	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0002	3108	81	1	17	53	3	7	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0003	3108	53	30	3	19	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0004	3108	33	10	10	3	4	6	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0005	3108	28	0	6	22	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0006	3108	11	0	4	4	1	2	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0007	3108	11	10	0	0	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/1	c0008	3108	10	1	2	3	0	3	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0009	3108	6	1	1	1	1	2	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	1/0	c0010	3108	6	0	0	2	0	3	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0011	3108	5	0	4	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0012	3108	5	5	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0013	3108	5	4	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0014	3108	3	3	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0015	3108	2	2	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0016	3108	2	2	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0017	3108	2	1	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0018	3108	2	0	2	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0019	3108	2	0	0	2	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0020	3108	1	0	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0021	3108	1	0	0	0	0	1	copy fasta	POM121L2	chr6	27303377	27317273