JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POM121L2_chr6_27303377_27317273	0/0	c0022	3108	1	1	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0023	3108	1	1	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0024	3108	1	0	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0025	3108	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0026	3108	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	c0027	3108	1	0	0	1	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121_chr7_72920095_72953299	0/0	c0001	3750	65	7	20	22	4	12	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/1	c0002	3750	63	2	7	44	2	7	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	1/0	c0003	3750	39	11	8	10	4	5	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0004	3750	24	0	0	24	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0005	3750	20	0	0	19	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0006	3750	13	1	2	10	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0007	3750	12	0	5	5	0	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0008	3750	12	7	1	3	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0009	3750	9	8	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0010	3750	8	0	6	0	2	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0011	3750	7	0	1	3	1	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0012	3750	7	0	0	7	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0013	3735	6	0	0	3	1	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0014	3744	5	0	5	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0015	3750	5	0	1	0	0	4	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0016	3750	5	0	4	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0017	3795	4	4	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0018	3750	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0019	3750	3	0	3	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0020	3750	3	0	0	3	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0021	3750	3	0	0	3	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0022	3750	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0023	3750	3	2	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0024	3735	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0025	3750	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0026	3765	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0027	3765	2	0	0	1	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0028	3765	2	1	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0029	3765	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0030	3750	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0031	3750	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0032	3750	2	0	2	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0033	3750	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0034	3750	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0035	3750	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0036	3750	2	0	2	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0037	3750	2	1	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0038	3750	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0039	3750	2	0	0	2	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0040	3750	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0041	3750	2	0	2	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0042	3735	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0043	3735	2	1	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0044	3744	1	0	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299