JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARMC5_chr16_31454501_31472165	0/0	c0018	2808	1	0	0	1	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0019	2808	1	0	0	1	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0020	2808	1	0	0	1	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0021	2808	1	0	1	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0022	2808	1	1	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0023	2808	1	0	0	0	0	1	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0024	2808	1	1	0	0	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	c0025	2808	1	0	0	1	0	0	copy fasta	ARMC5	chr16	31454501	31472165
ARMC6_chr19_19028603_19063176	1/1	c0001	1506	304	80	49	126	12	35	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0002	1506	6	6	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0003	1506	3	3	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0004	1506	2	0	2	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0005	1506	2	0	0	0	2	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0006	1506	1	0	0	1	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0007	1506	1	0	0	1	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0008	1506	1	0	0	0	0	1	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0009	1506	1	0	1	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	c0010	1506	1	1	0	0	0	0	copy fasta	ARMC6	chr19	19028603	19063176
ARMC7_chr17_75104969_75135272	1/1	c0001	597	393	87	78	163	16	47	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	c0002	597	6	6	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	c0003	597	1	0	0	0	0	1	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	c0004	597	1	0	0	1	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	c0005	597	1	1	0	0	0	0	copy fasta	ARMC7	chr17	75104969	75135272
ARMC8_chr3_138182301_138303373	1/1	c0001	2022	244	85	49	68	10	30	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	c0002	2022	1	0	1	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC8_chr3_138182301_138303373	0/0	c0003	2022	1	1	0	0	0	0	copy fasta	ARMC8	chr3	138182301	138303373
ARMC9_chr2_231193631_231381848	0/1	c0001	2457	110	2	19	67	3	18	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0002	2457	40	1	10	18	2	9	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0003	2457	25	0	4	14	4	3	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0004	2457	14	0	6	5	1	2	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0005	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0006	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0007	2457	1	1	0	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0008	2457	1	0	0	0	0	1	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	1/0	c0009	2457	1	0	0	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0010	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0011	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0012	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0013	2457	1	0	0	0	0	1	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0014	2457	1	0	0	1	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	c0015	2457	1	0	1	0	0	0	copy fasta	ARMC9	chr2	231193631	231381848
ARMCX1_chrX_101545547_101559700	1/1	c0001	1362	289	76	44	125	11	31	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0002	1362	5	0	2	0	2	1	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0003	1362	3	0	0	3	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0004	1359	1	0	0	1	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0005	1363	1	0	0	1	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0006	1362	1	0	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0007	1362	1	0	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	c0008	1362	1	0	1	0	0	0	copy fasta	ARMCX1	chrX	101545547	101559700
ARMCX2_chrX_101650281_101664850	0/1	c0001	1899	298	53	51	149	12	32	copy fasta	ARMCX2	chrX	101650281	101664850