JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POM121_chr7_72920095_72953299	0/0	c0095	3735	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0096	3735	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0097	3735	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0098	3735	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0099	3735	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0100	3750	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0101	3750	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0102	3750	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	c0103	3735	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POMC_chr2_25155860_25173580	1/1	c0001	804	307	59	61	135	14	36	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0002	804	65	0	4	56	0	5	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0003	813	38	27	8	0	0	3	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0004	903	2	0	2	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0005	804	2	0	1	0	1	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0006	804	1	1	0	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0007	822	1	1	0	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0008	804	1	0	0	1	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0009	804	1	0	1	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0010	804	1	0	1	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	c0011	804	1	0	0	0	1	0	copy fasta	POMC	chr2	25155860	25173580
POMGNT1_chr1_46183683_46203434	0/0	c0001	1983	247	41	29	145	7	25	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/1	c0002	1983	133	34	31	39	7	21	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	1/0	c0003	1983	19	17	1	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	c0004	1983	3	0	3	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	c0005	1983	2	1	1	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	c0006	1983	1	1	0	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	c0007	1983	1	0	1	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT2_chr3_43074234_43111079	0/1	c0001	1743	241	50	47	113	6	24	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	1/0	c0002	1743	93	11	19	47	3	12	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0003	1743	18	17	1	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0004	1743	5	5	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0005	1743	4	1	3	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0006	1743	3	3	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0007	1743	2	1	1	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0008	1743	1	0	0	1	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0009	1743	1	0	0	0	0	1	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0011	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0012	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0013	1743	1	0	0	0	1	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0014	1743	1	0	0	0	0	1	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0015	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0016	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0017	1743	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0018	1743	1	0	1	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	c0019	1743	1	0	0	1	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMK_chr8_43088515_43128434	1/1	c0001	1053	254	66	47	100	5	34	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0002	1053	13	12	1	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0003	1053	2	0	2	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0004	1053	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434