JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POMK_chr8_43088515_43128434	0/0	c0005	1053	1	0	0	0	1	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0006	1053	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0007	1053	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0009	1053	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMP_chr13_28654130_28683959	1/1	c0001	426	431	98	81	192	14	44	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	c0002	426	1	0	1	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMT1_chr9_131497918_131528799	0/1	c0001	2178	241	50	55	91	14	30	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0002	2178	32	2	4	21	3	2	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	1/0	c0003	2178	16	13	1	1	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0004	2178	11	0	5	6	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0005	2178	8	7	1	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0006	2178	5	5	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0007	2178	4	4	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0008	2178	3	0	0	0	1	2	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0009	2178	2	2	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0010	2178	2	2	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0011	2178	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0012	2178	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0013	2178	1	0	1	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0014	2178	1	0	0	1	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0015	2178	1	0	1	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0016	2178	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0017	2178	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0018	2178	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0019	2178	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	c0020	2178	1	0	0	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT2_chr14_77269956_77325883	0/1	c0001	2253	272	67	44	128	9	23	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0002	2253	51	1	3	40	0	7	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	1/0	c0003	2253	49	9	18	7	6	8	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0004	2253	6	6	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0005	2253	3	1	0	0	0	2	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0006	2253	3	1	1	0	1	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0007	2253	2	2	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0008	2253	2	0	0	2	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0009	2253	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0010	2253	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0011	2253	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0012	2253	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0013	2253	1	0	0	0	0	1	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0014	2253	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0015	2253	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0016	2253	1	0	0	0	0	1	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0017	2253	1	0	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	c0018	2253	1	0	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMZP3_chr7_76604986_76632279	0/0	c0001	564	193	17	31	114	7	24	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/1	c0002	563	186	51	44	67	9	14	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0003	564	15	13	2	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0004	563	11	9	2	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279