JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POMZP3_chr7_76604986_76632279	0/0	c0005	560	6	0	0	6	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0006	563	3	1	0	0	2	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0007	563	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0008	564	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0009	563	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0010	563	1	0	1	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0011	563	1	0	0	1	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0012	564	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	c0013	563	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
PON1_chr7_95292676_95329532	0/0	c0001	1068	235	61	34	113	7	20	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	1/1	c0002	1068	114	17	20	49	5	21	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0003	1068	41	2	14	15	4	6	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0004	1068	22	0	0	22	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0005	1068	15	14	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0006	1068	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0007	1068	1	0	0	0	0	1	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0008	1068	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0010	1068	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0011	1068	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	c0012	1068	1	0	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON2_chr7_95399862_95440028	1/1	c0001	1065	286	60	54	133	12	25	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0002	1065	97	25	18	39	0	15	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0003	1065	9	0	0	9	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0004	1065	3	3	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0005	1065	1	1	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0006	1065	1	0	0	1	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	c0007	1065	1	1	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON3_chr7_95354872_95401375	0/0	c0001	1065	121	6	17	80	4	14	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0002	1065	110	29	18	41	0	22	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	1/1	c0003	1065	108	30	23	39	4	10	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0004	1065	11	11	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0005	1065	4	0	0	4	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0006	1065	4	4	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0007	1065	3	3	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0008	1065	2	2	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0009	1065	2	1	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0010	1065	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0011	1065	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0012	1065	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0013	1065	1	1	0	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0014	1065	1	0	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0015	1065	1	0	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	c0016	1065	1	0	1	0	0	0	copy fasta	PON3	chr7	95354872	95401375
POP1_chr8_98112293_98164835	1/0	c0001	3075	332	52	64	162	10	43	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/1	c0002	3075	13	5	4	0	0	3	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0003	3075	12	6	3	0	1	2	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0004	3075	11	5	0	6	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0005	3075	7	2	2	0	2	1	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0006	3075	6	5	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835