JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POP1_chr8_98112293_98164835	0/0	c0007	3075	6	0	1	5	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0008	3075	6	6	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0009	3075	3	0	0	3	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0010	3075	3	1	2	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0011	3075	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0012	3075	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0013	3075	2	0	0	2	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0014	3075	2	2	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0015	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0016	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0017	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0018	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0019	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0020	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0021	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0022	3075	1	0	0	0	1	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0023	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0024	3075	1	0	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0025	3075	1	0	0	0	0	1	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0026	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0027	3075	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0028	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	c0029	3075	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP4_chr19_29601283_29622237	1/1	c0001	663	402	83	77	179	16	45	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0002	663	45	13	2	30	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0003	663	4	0	0	4	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0004	663	3	0	1	0	0	2	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0005	663	2	2	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0006	663	2	0	2	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0007	663	1	0	0	0	0	1	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0008	663	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0009	663	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	c0010	663	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP5_chr12_120573764_120586402	0/1	c0001	492	308	59	65	137	14	32	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	1/0	c0002	492	81	33	9	30	2	6	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	c0003	492	2	0	0	2	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	c0004	491	1	0	0	1	0	0	copy fasta	POP5	chr12	120573764	120586402
POP7_chr7_100701121_100712486	1/1	c0001	423	372	89	57	166	15	43	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	c0002	423	9	1	3	0	1	4	copy fasta	POP7	chr7	100701121	100712486
POP7_chr7_100701121_100712486	0/0	c0003	423	1	0	0	0	0	1	copy fasta	POP7	chr7	100701121	100712486
POPDC2_chr3_119637056_119665589	0/1	c0001	1107	217	40	30	119	7	20	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0002	1107	147	26	28	73	4	16	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0003	1107	24	0	7	0	3	14	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	1/0	c0004	1107	15	13	1	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0005	1107	1	0	1	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0006	1107	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0007	1107	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0008	1107	1	0	0	1	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0009	1107	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC2_chr3_119637056_119665589	0/0	c0010	1107	1	1	0	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589