JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POPDC2_chr3_119637056_119665589	0/0	c0011	1107	1	0	1	0	0	0	copy fasta	POPDC2	chr3	119637056	119665589
POPDC3_chr6_105152900_105185014	1/1	c0001	876	221	64	35	94	5	21	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0002	876	14	12	0	2	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0003	876	12	7	3	0	1	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0004	876	8	7	1	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0005	876	1	0	0	0	0	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0006	876	1	0	0	0	0	1	copy fasta	POPDC3	chr6	105152900	105185014
POPDC3_chr6_105152900_105185014	0/0	c0007	876	1	0	1	0	0	0	copy fasta	POPDC3	chr6	105152900	105185014
PORCN_chrX_48503992_48525808	1/1	c0001	1386	281	69	44	127	9	30	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0002	1386	9	8	1	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0003	1386	1	1	0	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0004	1388	1	1	0	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0005	1386	1	1	0	0	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0006	1386	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0007	1386	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0008	1387	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
PORCN_chrX_48503992_48525808	0/0	c0009	1386	1	0	0	1	0	0	copy fasta	PORCN	chrX	48503992	48525808
POR_chr7_75910155_75991855	0/0	c0001	2034	65	11	13	27	1	13	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/1	c0002	2034	59	5	15	26	4	8	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	1/0	c0003	2034	47	20	6	17	1	2	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0004	2034	33	3	15	7	2	6	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0005	2034	20	13	3	0	3	1	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0006	2034	9	4	1	2	0	2	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0007	2034	8	8	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0008	2034	7	0	2	5	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0009	2034	7	6	1	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0010	2035	4	2	1	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0011	2035	3	1	1	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0012	2035	2	1	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0013	2034	2	2	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0014	2034	1	0	0	0	0	1	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0015	2034	1	0	0	0	1	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0016	2034	1	0	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0017	2034	1	0	1	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0018	2036	1	0	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0019	2034	1	0	1	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0020	2035	1	0	0	0	0	1	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0021	2035	1	0	0	1	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0022	2034	1	1	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0023	2034	1	1	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0024	2034	1	1	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POR_chr7_75910155_75991855	0/0	c0025	2034	1	1	0	0	0	0	copy fasta	POR	chr7	75910155	75991855
POSTN_chr13_37557585_37603768	1/1	c0001	2511	355	66	51	184	17	35	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0002	2511	39	14	11	11	1	2	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0003	2511	9	7	2	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0004	2511	7	7	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0005	2511	1	0	0	0	0	1	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0006	2511	1	0	1	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0007	2511	1	1	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0008	2511	1	0	1	0	0	0	copy fasta	POSTN	chr13	37557585	37603768