JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POSTN_chr13_37557585_37603768	0/0	c0009	2511	1	0	0	1	0	0	copy fasta	POSTN	chr13	37557585	37603768
POSTN_chr13_37557585_37603768	0/0	c0010	2511	1	1	0	0	0	0	copy fasta	POSTN	chr13	37557585	37603768
POT1_chr7_124817386_124934825	1/1	c0001	1905	317	71	55	136	18	35	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0002	1905	10	8	2	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0003	1905	7	0	0	7	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0004	1905	2	0	0	2	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0005	1905	2	0	0	2	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0006	1905	2	1	0	0	0	1	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0007	1905	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0008	1905	1	0	1	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0009	1905	1	1	0	0	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0010	1905	1	0	0	1	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0011	1905	1	0	0	1	0	0	copy fasta	POT1	chr7	124817386	124934825
POT1_chr7_124817386_124934825	0/0	c0012	1905	1	0	0	1	0	0	copy fasta	POT1	chr7	124817386	124934825
POTEB2_chr15_20830372_20871314	0/0	c0001	1635	1	0	1	0	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	c0002	1635	1	0	0	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	c0003	1635	1	0	0	1	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB2_chr15_20830372_20871314	0/0	c0004	1635	1	0	1	0	0	0	copy fasta	POTEB2	chr15	20830372	20871314
POTEB3_chr15_21400401_21445499	0/1	c0001	1746	11	4	3	2	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0002	1746	10	4	1	4	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	1/0	c0003	1746	9	1	3	4	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0004	1746	6	1	1	4	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0005	1746	6	0	0	5	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0006	1746	2	0	1	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0007	1746	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0008	1746	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0009	1746	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0010	1746	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0011	1746	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0012	1746	1	0	1	0	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0013	1746	1	0	0	0	0	1	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0014	1746	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0015	1746	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB3_chr15_21400401_21445499	0/0	c0016	1635	1	0	0	1	0	0	copy fasta	POTEB3	chr15	21400401	21445499
POTEB_chr15_21841329_21882735	0/0	c0001	1635	28	7	6	13	1	1	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0002	1635	8	8	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0003	1635	5	0	2	3	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0004	1635	3	0	3	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0005	1635	2	2	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0006	1635	2	2	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0007	1635	2	0	2	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0008	1635	2	2	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0009	1635	1	0	0	0	1	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0010	1635	1	0	1	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0011	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0012	1635	1	0	0	0	0	1	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0013	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0014	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0015	1635	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0016	1635	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735