JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTEB_chr15_21841329_21882735	0/0	c0017	1635	1	1	0	0	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0018	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0019	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEB_chr15_21841329_21882735	0/0	c0020	1635	1	0	0	1	0	0	copy fasta	POTEB	chr15	21841329	21882735
POTEC_chr18_14502339_14548600	0/0	c0001	1629	78	0	16	54	1	7	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/1	c0002	1629	75	20	18	19	5	12	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	1/0	c0003	1629	62	3	12	40	0	6	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0004	1629	58	16	10	23	1	8	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0005	1629	21	11	4	2	3	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0006	1629	17	12	3	0	2	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0007	1629	11	10	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0008	1629	10	0	0	10	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0009	1629	10	0	0	9	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0010	1629	10	3	0	7	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0011	1629	5	5	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0012	1629	5	0	0	5	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0013	1629	4	4	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0014	1629	3	0	0	3	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0015	1629	2	0	0	2	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0016	1629	2	2	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0017	1629	2	1	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0018	1629	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0019	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0020	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0021	1629	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0022	1629	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0023	1629	1	0	0	1	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0024	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0025	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0026	1607	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0027	1629	1	0	0	0	0	1	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0028	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0029	1629	1	0	1	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTEC_chr18_14502339_14548600	0/0	c0030	1629	1	1	0	0	0	0	copy fasta	POTEC	chr18	14502339	14548600
POTED_chr21_13604777_13650823	0/0	c0001	1755	154	53	22	62	4	13	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	1/1	c0002	1755	81	10	23	33	2	11	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0003	1755	71	5	4	53	2	7	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0004	1755	36	0	1	31	1	3	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0005	1755	29	0	18	0	2	9	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0006	1751	9	9	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0007	1755	7	0	0	7	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0008	1755	7	6	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0009	1755	6	1	4	0	0	1	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0010	1755	3	3	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0011	1755	3	2	1	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0012	1755	3	0	0	3	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0013	1755	2	2	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0014	1755	2	0	0	2	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0015	1755	1	1	0	0	0	0	copy fasta	POTED	chr21	13604777	13650823
POTED_chr21_13604777_13650823	0/0	c0016	1755	1	0	0	1	0	0	copy fasta	POTED	chr21	13604777	13650823