JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTED_chr21_13604777_13650823	0/0	c0017	1755	1	0	0	0	1	0	copy fasta	POTED	chr21	13604777	13650823
POTEE_chr2_131204536_131270278	0/0	c0001	3228	133	21	31	57	4	20	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0002	3228	43	5	3	23	4	8	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0003	3228	10	10	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0004	3228	9	9	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0005	3228	8	8	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0006	3228	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0007	3228	5	1	1	0	2	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0008	3228	5	5	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0009	3228	4	4	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0010	3228	3	0	0	3	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0011	3228	3	0	1	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0012	3228	3	1	2	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0013	3228	3	3	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0014	3228	2	0	0	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0015	3228	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0016	3228	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0017	3228	2	0	0	2	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0018	3228	2	0	1	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	1/0	c0019	3228	2	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0020	3228	2	2	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0021	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0022	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0023	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0024	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0025	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0026	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0027	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0028	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0029	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0030	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0031	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0032	3228	1	0	0	0	1	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/1	c0033	3228	1	0	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0034	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0035	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0036	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0037	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0038	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0039	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0040	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0041	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0042	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0043	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0044	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0045	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0046	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0047	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0048	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0049	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278