JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTEE_chr2_131204536_131270278	0/0	c0050	3228	1	0	0	0	1	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0051	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0052	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0053	3228	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0054	2629	1	0	0	0	0	1	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0055	3228	1	0	0	1	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0056	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0057	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0058	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0059	3228	1	0	1	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEE_chr2_131204536_131270278	0/0	c0060	3228	1	1	0	0	0	0	copy fasta	POTEE	chr2	131204536	131270278
POTEF_chr2_130068535_130134222	0/0	c0001	3228	45	8	7	24	1	5	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0002	3228	38	0	14	15	1	8	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0003	3228	13	7	0	5	0	1	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0004	3228	8	8	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0005	3228	5	4	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0006	3228	4	4	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0007	3228	4	3	1	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0008	3228	3	3	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0009	3228	3	0	2	0	1	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0010	3228	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0011	3228	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0012	3228	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0013	3228	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0014	3228	2	2	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0015	3228	2	0	1	0	1	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0016	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0017	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0018	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0019	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0020	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0021	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0022	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0023	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	1/0	c0024	3228	1	0	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0025	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0026	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0027	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0028	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0029	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0030	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0031	3228	1	0	0	0	0	1	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0032	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0033	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0034	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0035	3228	1	0	0	0	0	1	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0036	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0037	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0038	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0039	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222