JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARMCX2_chrX_101650281_101664850	0/0	c0002	1899	8	8	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0003	1899	7	1	5	0	1	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	1/0	c0004	1899	6	5	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0005	1899	4	4	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0006	1899	4	4	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0007	1899	2	2	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0008	1881	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0009	1899	1	1	0	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0010	1917	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0011	1899	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0012	1899	1	0	0	1	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	c0013	1899	1	0	1	0	0	0	copy fasta	ARMCX2	chrX	101650281	101664850
ARMCX3_chrX_101618151_101632843	1/1	c0001	1140	267	71	47	113	12	22	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	c0002	1140	30	1	4	22	1	2	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	c0003	1140	2	2	0	0	0	0	copy fasta	ARMCX3	chrX	101618151	101632843
ARMCX4_chrX_101480456_101500807	0/1	c0001	7299	112	11	20	58	6	16	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0002	7287	77	1	15	52	1	8	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0003	7293	20	9	3	4	0	4	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0004	7269	8	8	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0005	7269	8	8	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0006	7287	7	7	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0007	7269	7	0	0	6	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0008	7269	7	5	2	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0009	7287	5	4	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0010	7299	5	0	5	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0011	7269	4	4	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0012	7287	3	0	0	3	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0013	7269	3	3	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0014	7269	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0015	7269	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0016	7287	2	0	0	2	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0017	7299	2	0	0	2	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0018	7299	2	0	2	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0019	7269	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0020	7269	2	2	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0021	7281	2	1	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0022	7285	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0023	7283	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0024	7287	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0025	7269	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0026	7269	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0027	7287	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0028	7289	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0029	7287	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0030	7287	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0031	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0032	7289	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0033	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0034	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	1/0	c0035	6873	1	0	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807