JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTEF_chr2_130068535_130134222	0/0	c0040	3228	1	0	0	1	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0041	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0042	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0043	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0044	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEF_chr2_130068535_130134222	0/0	c0045	3228	1	1	0	0	0	0	copy fasta	POTEF	chr2	130068535	130134222
POTEG_chr14_19397486_19439341	0/0	c0001	1527	26	1	10	11	0	4	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0002	1527	8	3	3	1	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0003	1527	6	2	0	3	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0004	1527	6	0	3	2	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0005	1527	6	1	0	1	1	3	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0006	1527	5	0	2	3	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0007	1527	4	0	1	3	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0008	1527	4	0	0	1	0	3	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	1/0	c0009	1527	3	0	0	2	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0010	1527	3	3	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0011	1527	2	2	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0012	1527	2	1	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0013	1527	2	2	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0014	1527	2	0	0	2	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0015	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0016	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0017	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0018	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0019	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0020	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0021	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0022	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0023	1527	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0024	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0025	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0026	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0027	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0028	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0029	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0030	1527	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0031	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0032	1527	1	0	0	0	0	1	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0033	1527	1	0	0	0	1	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0034	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0035	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0036	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0037	1527	1	0	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0038	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0039	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0040	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0041	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0042	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0043	1527	1	0	1	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0044	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341