JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTEG_chr14_19397486_19439341	0/0	c0045	1527	1	0	0	1	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEG_chr14_19397486_19439341	0/0	c0046	1527	1	1	0	0	0	0	copy fasta	POTEG	chr14	19397486	19439341
POTEH_chr22_15685026_15726631	0/0	c0001	1749	1	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEH_chr22_15685026_15726631	1/0	c0002	1638	1	0	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEH_chr22_15685026_15726631	0/0	c0003	1638	1	1	0	0	0	0	copy fasta	POTEH	chr22	15685026	15726631
POTEI_chr2_130454455_130514328	0/0	c0001	3228	74	3	36	21	5	9	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0002	3228	6	1	3	1	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0003	3228	4	0	2	1	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0004	3228	4	4	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0005	3228	3	0	0	0	0	3	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	1/0	c0006	3228	3	2	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0007	3228	3	3	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0008	3228	2	0	0	2	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0009	3228	2	0	0	2	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0010	3228	2	2	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0011	3228	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0012	3228	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0013	3228	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0014	3228	1	0	0	0	0	1	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0015	3228	1	0	0	0	1	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0016	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0017	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0018	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0019	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0020	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0021	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0022	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0023	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0024	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0025	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0026	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0027	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0028	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0029	3228	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0030	3228	1	0	0	1	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0031	3228	1	0	1	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEI_chr2_130454455_130514328	0/0	c0032	3117	1	1	0	0	0	0	copy fasta	POTEI	chr2	130454455	130514328
POTEJ_chr2_130606440_130663037	0/1	c0001	3117	43	1	10	21	4	6	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0002	3117	21	0	0	15	0	6	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0003	3117	15	0	5	8	0	2	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0004	3228	7	1	2	4	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0005	3117	5	5	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0006	3117	4	0	0	3	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0007	3117	3	1	0	0	0	2	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0008	3117	3	3	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0009	3117	2	2	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0010	3117	2	2	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0011	3141	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0012	3117	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0013	3117	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037