JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POTEJ_chr2_130606440_130663037	0/0	c0014	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0015	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0016	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0017	3117	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0018	3117	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0019	3117	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0020	3117	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0021	3117	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0022	3117	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0023	3117	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0024	3117	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0025	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0026	3117	1	0	0	0	0	1	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0027	3117	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0028	2748	1	0	1	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0029	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0030	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0031	3117	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0032	3228	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0033	3117	1	0	0	1	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0034	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0035	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEJ_chr2_130606440_130663037	0/0	c0036	3117	1	1	0	0	0	0	copy fasta	POTEJ	chr2	130606440	130663037
POTEM_chr14_18962434_19008752	0/0	c0001	1527	23	3	3	14	0	3	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	1/0	c0002	1527	6	0	5	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0003	1527	5	0	1	4	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0004	1527	4	0	0	3	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0005	1527	3	0	0	3	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0006	1527	3	0	0	3	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0007	1527	3	1	1	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0008	1527	2	2	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0009	1527	2	0	0	2	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0010	1527	2	0	0	0	0	2	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0011	1527	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0012	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0013	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0014	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0015	1527	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0016	1527	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0017	1527	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0018	1527	1	1	0	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0019	1527	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0020	1527	1	0	0	1	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0021	1527	1	0	0	0	0	1	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0022	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0023	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POTEM_chr14_18962434_19008752	0/0	c0024	1527	1	0	1	0	0	0	copy fasta	POTEM	chr14	18962434	19008752
POU1F1_chr3_87254404_87281584	1/1	c0001	876	417	92	75	195	12	41	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	c0002	876	1	0	0	1	0	0	copy fasta	POU1F1	chr3	87254404	87281584
POU1F1_chr3_87254404_87281584	0/0	c0003	876	1	0	0	0	0	1	copy fasta	POU1F1	chr3	87254404	87281584