JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POU3F1_chr1_38038829_38051793	1/1	c0001	1356	370	86	66	162	15	39	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0002	1356	5	5	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0003	1356	4	4	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0004	1353	3	0	0	0	3	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0005	1353	2	0	0	2	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0006	1356	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0009	1356	1	0	0	0	0	1	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0010	1356	1	1	0	0	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F1_chr1_38038829_38051793	0/0	c0011	1356	1	0	0	1	0	0	copy fasta	POU3F1	chr1	38038829	38051793
POU3F2_chr6_98829574_98844458	0/1	c0001	1332	347	73	56	172	12	33	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0002	1333	42	5	8	21	1	7	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	1/0	c0003	1332	38	15	10	2	2	8	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0004	1333	5	2	0	2	0	1	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0005	1332	1	0	0	1	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0006	1332	1	0	0	0	1	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0007	1332	1	1	0	0	0	0	copy fasta	POU3F2	chr6	98829574	98844458
POU3F2_chr6_98829574_98844458	0/0	c0008	1332	1	0	0	0	0	1	copy fasta	POU3F2	chr6	98829574	98844458
POU3F3_chr2_104849115_104863574	0/0	c0001	1503	274	54	48	140	12	20	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	1/1	c0002	1503	104	35	19	30	4	14	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0003	1504	16	4	1	7	0	4	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0004	1504	4	3	0	0	0	1	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0005	1503	2	0	0	0	0	2	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0006	1503	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0007	1503	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0008	1503	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0009	1503	1	0	0	0	0	1	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0010	1503	1	1	0	0	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F3_chr2_104849115_104863574	0/0	c0011	1503	1	0	0	1	0	0	copy fasta	POU3F3	chr2	104849115	104863574
POU3F4_chrX_83503290_83517127	1/1	c0001	1086	299	72	52	136	9	28	copy fasta	POU3F4	chrX	83503290	83517127
POU3F4_chrX_83503290_83517127	0/0	c0002	1085	1	0	0	1	0	0	copy fasta	POU3F4	chrX	83503290	83517127
POU4F1_chr13_78593362_78608552	0/1	c0001	1263	410	84	79	192	14	40	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0002	1263	6	6	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0003	1263	6	5	1	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0004	1263	3	2	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0005	1245	1	0	0	0	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0006	1245	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	1/0	c0007	1260	1	0	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0008	1263	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0009	1263	1	0	0	0	0	1	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0010	1247	1	0	0	1	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F1_chr13_78593362_78608552	0/0	c0011	1263	1	1	0	0	0	0	copy fasta	POU4F1	chr13	78593362	78608552
POU4F2_chr4_146633893_146647474	0/1	c0001	1233	237	25	53	125	9	24	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	1/0	c0002	1230	91	25	12	43	3	7	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0003	1221	36	15	1	14	3	3	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0004	1233	10	0	0	9	0	1	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0005	1239	6	2	2	2	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0006	1245	5	5	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0007	1233	4	4	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474