JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POU4F2_chr4_146633893_146647474	0/0	c0008	1236	4	0	2	1	0	1	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0009	1221	3	1	2	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0010	1242	3	0	0	3	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0011	1230	3	3	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0012	1251	2	2	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0013	1221	1	0	0	0	0	1	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0014	1218	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0015	1230	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0016	1218	1	0	1	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0017	1233	1	1	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0018	1233	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0019	1233	1	0	0	0	1	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0020	1236	1	0	0	0	0	1	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0021	1242	1	0	0	1	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F2_chr4_146633893_146647474	0/0	c0022	1245	1	1	0	0	0	0	copy fasta	POU4F2	chr4	146633893	146647474
POU4F3_chr5_146333839_146346728	1/1	c0001	1017	332	83	69	128	17	33	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	c0002	1017	7	7	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	c0003	1017	5	0	3	0	1	1	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	c0004	1017	4	0	0	4	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	c0005	1017	3	3	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU4F3_chr5_146333839_146346728	0/0	c0006	1017	1	1	0	0	0	0	copy fasta	POU4F3	chr5	146333839	146346728
POU5F1B_chr8_127410867_127421946	0/1	c0001	1080	184	10	32	118	4	19	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	1/0	c0002	1080	114	20	19	57	5	12	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0003	1080	53	45	6	0	2	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0004	1080	35	7	9	10	2	7	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0005	1080	27	0	7	19	1	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0006	1080	8	6	0	0	0	2	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0007	1080	6	5	1	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0008	1080	3	1	2	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0009	1080	2	2	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0010	1080	2	2	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0011	1080	2	0	0	2	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0012	1080	1	0	0	1	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0013	1080	1	0	0	1	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0014	1080	1	1	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1B_chr8_127410867_127421946	0/0	c0015	1080	1	1	0	0	0	0	copy fasta	POU5F1B	chr8	127410867	127421946
POU5F1_chr6_31159337_31175682	0/0	c0001	1083	116	33	19	50	3	11	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0002	1083	107	19	14	57	4	13	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0003	1083	104	17	19	52	5	11	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/1	c0004	1083	40	15	10	6	3	5	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0005	1083	28	0	3	24	0	1	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0006	1083	22	7	8	7	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0007	1083	18	0	7	5	2	4	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0008	1083	3	0	0	1	1	1	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0009	1083	2	2	0	0	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0010	1083	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0011	1083	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0012	1083	1	1	0	0	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0013	1083	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682
POU5F1_chr6_31159337_31175682	0/0	c0014	1083	1	0	0	1	0	0	copy fasta	POU5F1	chr6	31159337	31175682