JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
POU5F2_chr5_93728220_93746600	1/1	c0001	987	367	90	53	181	12	29	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	c0002	987	3	0	0	3	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	c0003	987	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	c0004	987	1	0	0	0	0	1	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	c0005	987	1	0	1	0	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU5F2_chr5_93728220_93746600	0/0	c0006	987	1	0	0	1	0	0	copy fasta	POU5F2	chr5	93728220	93746600
POU6F1_chr12_51181936_51223062	0/1	c0001	1836	372	78	71	174	13	35	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	1/0	c0002	1836	48	10	11	19	2	5	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0003	1836	8	0	0	8	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0004	1836	3	3	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0005	1836	2	0	0	2	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0006	1836	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0007	1836	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0008	1836	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0009	1836	1	0	0	1	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0010	1836	1	0	0	0	1	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0011	1836	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F1_chr12_51181936_51223062	0/0	c0012	1836	1	1	0	0	0	0	copy fasta	POU6F1	chr12	51181936	51223062
POU6F2_chr7_38972909_39473601	0/0	c0001	2163	69	24	17	12	2	14	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0002	2163	24	7	11	2	0	4	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/1	c0003	2163	17	11	1	3	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0004	2163	14	1	5	7	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0005	2163	11	11	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0006	2163	10	0	0	8	0	2	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0007	2163	8	0	0	5	2	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0008	2163	7	2	0	4	0	1	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0009	2163	2	2	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0010	2163	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0011	2163	1	0	1	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0012	2163	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0013	2163	1	0	0	1	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	1/0	c0014	2163	1	0	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0015	2163	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0016	2163	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
POU6F2_chr7_38972909_39473601	0/0	c0017	2163	1	1	0	0	0	0	copy fasta	POU6F2	chr7	38972909	39473601
PP2D1_chr3_19980346_20017264	1/1	c0001	1893	248	52	52	102	13	27	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0002	1893	88	16	9	48	1	14	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0003	1893	22	12	7	0	2	1	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0004	1893	12	0	6	4	0	2	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0005	1893	10	10	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0006	1893	8	8	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0007	1893	2	0	0	2	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0008	1893	2	0	2	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0010	1893	1	1	0	0	0	0	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0011	1893	1	0	0	0	0	1	copy fasta	PP2D1	chr3	19980346	20017264
PP2D1_chr3_19980346_20017264	0/0	c0012	1893	1	0	0	0	0	1	copy fasta	PP2D1	chr3	19980346	20017264
PPA1_chr10_70197835_70238429	1/1	c0001	870	384	78	77	165	16	46	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	c0002	870	16	14	2	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	c0003	870	6	6	0	0	0	0	copy fasta	PPA1	chr10	70197835	70238429