JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPA1_chr10_70197835_70238429	0/0	c0004	870	1	0	1	0	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA1_chr10_70197835_70238429	0/0	c0005	870	1	0	0	1	0	0	copy fasta	PPA1	chr10	70197835	70238429
PPA2_chr4_105364077_105479062	1/0	c0001	1005	189	80	34	48	6	20	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/1	c0002	1005	148	7	23	102	6	9	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0003	1005	13	1	8	1	0	3	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0004	1005	5	1	3	0	1	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0005	1005	2	2	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0006	1005	2	0	0	2	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0007	1005	2	0	1	0	1	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0008	1005	1	0	1	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0009	1005	1	0	0	0	0	1	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0010	1005	1	1	0	0	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0011	1005	1	0	0	0	0	1	copy fasta	PPA2	chr4	105364077	105479062
PPA2_chr4_105364077_105479062	0/0	c0012	1029	1	0	0	1	0	0	copy fasta	PPA2	chr4	105364077	105479062
PPAN_chr19_10101362_10117012	1/1	c0001	1422	251	60	51	107	8	23	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0002	1422	125	4	31	63	6	21	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0003	1422	20	20	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0004	1422	15	15	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0005	1422	9	0	0	9	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0006	1422	7	0	0	4	0	3	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0007	1422	4	0	0	4	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0008	1422	2	0	0	2	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0009	1422	1	0	0	0	0	1	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0010	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0011	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0012	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0013	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0014	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0015	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0016	1422	1	1	0	0	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPAN_chr19_10101362_10117012	0/0	c0017	1422	1	0	0	1	0	0	copy fasta	PPAN	chr19	10101362	10117012
PPARA_chr22_46145526_46248755	1/1	c0001	1407	182	88	32	34	5	21	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0002	1407	6	0	3	3	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0003	1407	4	0	2	0	1	1	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0004	1407	2	0	0	2	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0005	1407	2	0	2	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0006	1407	2	2	0	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0007	1407	1	0	1	0	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARA_chr22_46145526_46248755	0/0	c0008	1407	1	0	0	1	0	0	copy fasta	PPARA	chr22	46145526	46248755
PPARD_chr6_35337558_35433178	0/0	c0001	1326	130	29	30	49	2	20	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	1/1	c0002	1326	106	53	16	27	2	6	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	c0003	1326	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARD_chr6_35337558_35433178	0/0	c0004	1326	1	0	0	1	0	0	copy fasta	PPARD	chr6	35337558	35433178
PPARGC1A_chr4_23787021_23895047	0/0	c0001	2397	106	50	25	17	4	10	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0002	2397	90	5	20	52	6	7	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	1/0	c0003	2397	52	0	7	37	1	6	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0004	2397	44	8	2	27	0	7	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0005	2397	23	19	2	0	0	2	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/1	c0006	2397	9	1	3	0	1	3	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0007	2397	7	7	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047