JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPARGC1A_chr4_23787021_23895047	0/0	c0008	2397	3	2	1	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0009	2397	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0010	2397	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0011	2397	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0012	2397	1	0	0	0	0	1	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0013	2397	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0014	2397	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0015	2397	1	0	0	1	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1A_chr4_23787021_23895047	0/0	c0016	2397	1	1	0	0	0	0	copy fasta	PPARGC1A	chr4	23787021	23895047
PPARGC1B_chr5_149725310_149860022	1/1	c0001	3072	142	12	28	76	6	18	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0002	3072	31	13	4	12	0	2	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0003	3072	25	0	13	10	1	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0004	3072	21	7	3	4	2	5	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0005	3072	21	5	6	7	0	3	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0006	3072	7	6	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0007	3072	7	7	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0008	3072	6	6	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0009	3072	6	3	2	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0010	3072	6	6	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0011	3072	5	3	2	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0012	3072	5	0	0	5	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0013	3072	4	4	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0014	3072	4	0	0	3	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0015	3072	3	3	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0016	3072	3	3	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0017	3072	3	2	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0018	3072	3	0	2	0	1	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0019	3072	2	2	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0020	3072	2	2	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0021	3072	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0022	3072	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0023	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0024	3072	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0025	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0026	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0027	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0028	3072	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0029	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0030	3072	1	1	0	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0031	3072	1	0	1	0	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0032	3072	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0033	3072	1	0	0	0	0	1	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARGC1B_chr5_149725310_149860022	0/0	c0034	3072	1	0	0	1	0	0	copy fasta	PPARGC1B	chr5	149725310	149860022
PPARG_chr3_12284070_12439344	1/0	c0001	1428	253	74	55	93	9	21	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/1	c0002	1428	36	6	8	19	1	1	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/0	c0003	1428	2	1	1	0	0	0	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/0	c0004	1428	2	2	0	0	0	0	copy fasta	PPARG	chr3	12284070	12439344
PPARG_chr3_12284070_12439344	0/0	c0005	1428	1	1	0	0	0	0	copy fasta	PPARG	chr3	12284070	12439344
PPAT_chr4_56388362_56440615	1/0	c0001	1554	249	50	33	138	7	20	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/1	c0002	1554	68	23	17	7	4	16	copy fasta	PPAT	chr4	56388362	56440615