JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPAT_chr4_56388362_56440615	0/0	c0003	1554	45	11	4	25	3	2	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	c0004	1554	17	0	0	17	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	c0005	1554	4	4	0	0	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPAT_chr4_56388362_56440615	0/0	c0006	1554	1	0	0	1	0	0	copy fasta	PPAT	chr4	56388362	56440615
PPBP_chr4_73981439_73993190	1/1	c0001	387	367	88	60	167	12	38	copy fasta	PPBP	chr4	73981439	73993190
PPBP_chr4_73981439_73993190	0/0	c0002	387	1	0	0	1	0	0	copy fasta	PPBP	chr4	73981439	73993190
PPCDC_chr15_75018590_75055726	0/1	c0001	615	307	43	57	158	12	36	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	1/0	c0002	615	86	41	7	29	2	6	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	c0003	615	4	2	2	0	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCDC_chr15_75018590_75055726	0/0	c0004	615	1	0	0	1	0	0	copy fasta	PPCDC	chr15	75018590	75055726
PPCS_chr1_42451543_42466236	1/1	c0001	936	381	78	69	170	16	46	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	c0002	936	9	9	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	c0003	936	4	0	0	4	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	c0004	936	1	1	0	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPCS_chr1_42451543_42466236	0/0	c0005	936	1	0	1	0	0	0	copy fasta	PPCS	chr1	42451543	42466236
PPDPFL_chr8_49067344_49081093	1/1	c0001	255	416	83	78	194	18	41	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	c0002	255	13	13	0	0	0	0	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPFL_chr8_49067344_49081093	0/0	c0003	255	3	0	0	2	0	1	copy fasta	PPDPFL	chr8	49067344	49081093
PPDPF_chr20_63515765_63527206	1/1	c0001	345	387	90	76	158	18	43	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	c0002	345	5	0	0	0	0	5	copy fasta	PPDPF	chr20	63515765	63527206
PPDPF_chr20_63515765_63527206	0/0	c0003	345	2	2	0	0	0	0	copy fasta	PPDPF	chr20	63515765	63527206
PPEF1_chrX_18702645_18832917	1/1	c0001	1962	207	49	36	95	6	19	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0002	1962	4	0	3	0	1	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0003	1962	4	4	0	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0004	1962	3	2	1	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0005	1962	1	1	0	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0006	1963	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0007	1962	1	0	0	1	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0008	1962	1	1	0	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0009	1962	1	1	0	0	0	0	copy fasta	PPEF1	chrX	18702645	18832917
PPEF1_chrX_18702645_18832917	0/0	c0010	1962	1	0	0	0	0	1	copy fasta	PPEF1	chrX	18702645	18832917
PPEF2_chr4_75854867_75907452	0/1	c0001	2262	196	36	48	71	16	24	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0002	2262	13	10	3	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0003	2262	12	3	4	0	0	5	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0004	2262	10	8	2	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0005	2262	7	7	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0006	2262	4	4	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0007	2263	4	4	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0008	2262	3	3	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0009	2262	3	1	1	0	0	1	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0010	2262	2	1	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0011	2262	2	2	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0012	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0013	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0014	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0015	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0016	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0017	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0018	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0019	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452