JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARMCX4_chrX_101480456_101500807	0/0	c0036	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0037	7287	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0038	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0039	7221	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0040	7287	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0041	7269	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0042	7311	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0043	7286	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0044	7299	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0045	7299	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0046	7269	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0047	7300	1	0	0	0	0	1	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0048	7305	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0049	7287	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0050	7305	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0051	7269	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0052	7296	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0053	7300	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0054	7288	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0055	7299	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0056	7293	1	0	1	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0057	7299	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0058	7299	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0059	7300	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0060	7299	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0061	7300	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0062	7311	1	0	0	0	1	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0063	7292	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0064	7269	1	1	0	0	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	c0065	7304	1	0	0	1	0	0	copy fasta	ARMCX4	chrX	101480456	101500807
ARMCX5_chrX_102594515_102609159	1/0	c0001	1677	293	72	47	126	13	34	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	c0002	1677	9	0	0	9	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	c0003	1677	7	0	0	7	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	c0004	1677	4	4	0	0	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/1	c0005	1677	1	0	0	0	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	c0006	1677	1	0	0	1	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	ARMCX5	chrX	102594515	102609159
ARMCX6_chrX_101610125_101623000	1/1	c0001	903	81	36	10	19	5	9	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	c0002	903	12	1	3	6	0	2	copy fasta	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	c0003	903	1	1	0	0	0	0	copy fasta	ARMCX6	chrX	101610125	101623000
ARMH1_chr1_44669714_44730591	1/1	c0001	1323	280	81	64	92	9	32	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	c0002	1323	2	0	2	0	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	c0003	1323	2	1	1	0	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	c0004	1323	2	0	1	1	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	c0005	1323	1	0	0	1	0	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH1_chr1_44669714_44730591	0/0	c0006	1323	1	0	0	0	1	0	copy fasta	ARMH1	chr1	44669714	44730591
ARMH2_chr6_24792335_24803917	0/0	c0001	693	238	44	31	142	0	21	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	1/1	c0002	693	161	31	47	52	10	19	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	c0003	693	31	16	3	11	0	1	copy fasta	ARMH2	chr6	24792335	24803917
ARMH2_chr6_24792335_24803917	0/0	c0004	693	5	1	0	1	1	2	copy fasta	ARMH2	chr6	24792335	24803917