JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPEF2_chr4_75854867_75907452	0/0	c0020	2262	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0021	2278	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0022	2262	1	0	0	1	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0023	2262	1	0	1	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	1/0	c0024	2262	1	0	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPEF2_chr4_75854867_75907452	0/0	c0025	2262	1	1	0	0	0	0	copy fasta	PPEF2	chr4	75854867	75907452
PPFIA1_chr11_70265690_70389396	1/1	c0001	3609	126	29	22	49	9	15	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0002	3609	71	17	7	30	5	12	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0003	3609	42	18	14	4	2	4	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0004	3609	13	13	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0005	3609	9	9	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0006	3609	7	0	7	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0007	3609	4	4	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0008	3609	1	0	1	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0009	3609	1	0	1	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0010	3609	1	0	0	1	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0011	3609	1	0	0	1	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0012	3609	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0013	3609	1	0	0	0	0	1	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0014	3609	1	0	0	1	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0015	3609	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0016	3609	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA1_chr11_70265690_70389396	0/0	c0017	3609	1	1	0	0	0	0	copy fasta	PPFIA1	chr11	70265690	70389396
PPFIA2_chr12_81252975_81764350	0/0	c0001	3774	94	19	18	42	2	13	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	c0002	3774	63	12	15	27	2	7	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	c0003	3774	4	3	1	0	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	c0004	3774	4	4	0	0	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	c0005	3774	2	0	0	2	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA2_chr12_81252975_81764350	0/0	c0006	3774	1	0	0	1	0	0	copy fasta	PPFIA2	chr12	81252975	81764350
PPFIA3_chr19_49114544_49156026	1/0	c0001	3585	188	37	29	96	7	18	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/1	c0002	3585	129	43	27	28	7	23	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0003	3585	21	1	9	11	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0004	3585	4	4	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0005	3585	3	0	3	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0006	3585	3	0	0	3	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0007	3585	2	2	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0008	3585	2	2	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0009	3585	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0010	3585	1	0	0	0	0	1	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0011	3585	1	0	1	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0012	3585	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0013	3585	1	0	1	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0014	3585	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0015	3585	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0016	3585	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0017	3585	1	0	0	1	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA3_chr19_49114544_49156026	0/0	c0018	3585	1	1	0	0	0	0	copy fasta	PPFIA3	chr19	49114544	49156026
PPFIA4_chr1_203021491_203083736	0/0	c0001	3624	144	12	21	88	7	16	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/1	c0002	3624	138	51	30	47	1	8	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0003	3624	31	3	4	15	2	7	copy fasta	PPFIA4	chr1	203021491	203083736