JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPFIA4_chr1_203021491_203083736	0/0	c0004	3624	31	3	5	16	1	6	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0005	3624	19	13	5	0	0	1	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0006	3624	15	4	5	3	3	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0007	3624	8	0	4	1	1	2	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0008	3624	5	0	2	0	0	3	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0009	3624	3	0	0	3	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0010	3624	3	3	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0011	3624	2	0	0	0	1	1	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0012	3624	2	2	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0013	3624	2	0	0	0	0	2	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0014	3624	2	0	0	2	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0015	3624	2	0	2	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0016	3624	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0017	3624	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0018	3624	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0019	3624	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0020	3624	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0021	3624	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0022	3624	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0023	3624	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0024	3624	1	0	0	1	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	0/0	c0025	3624	1	1	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIA4_chr1_203021491_203083736	1/0	c0026	3624	1	0	0	0	0	0	copy fasta	PPFIA4	chr1	203021491	203083736
PPFIBP1_chr12_27519206_27700564	0/1	c0001	3018	172	29	37	85	5	15	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0002	3018	89	16	20	41	1	11	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0003	3018	8	0	0	8	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0004	3018	6	6	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0005	3018	5	2	2	0	1	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0006	3018	4	4	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	1/0	c0007	3018	3	2	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0008	3018	3	1	0	2	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0009	3018	3	3	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0010	3018	3	3	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0011	3018	2	0	0	2	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0012	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0013	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0014	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0015	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0016	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0017	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0018	3018	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0019	3018	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0020	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0021	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0022	3018	1	0	0	0	1	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0023	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0024	3018	1	1	0	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0025	3018	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0026	3018	1	0	1	0	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564
PPFIBP1_chr12_27519206_27700564	0/0	c0027	3018	1	0	0	1	0	0	copy fasta	PPFIBP1	chr12	27519206	27700564