JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPIAL4F_chr1_144587893_144598652	0/0	c0003	495	20	15	0	3	0	2	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0004	495	11	0	4	7	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0005	495	5	5	0	0	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0006	495	2	0	0	0	1	1	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0007	495	2	0	0	2	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0008	495	1	0	0	0	1	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0009	495	1	1	0	0	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0010	495	1	0	1	0	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0011	495	1	0	0	1	0	0	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4F_chr1_144587893_144598652	0/0	c0012	495	1	0	0	0	0	1	copy fasta	PPIAL4F	chr1	144587893	144598652
PPIAL4G_chr1_148477548_148488302	1/1	c0001	495	322	88	52	138	14	28	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0002	495	106	2	18	75	2	9	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0003	495	5	0	0	0	0	5	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0004	495	4	3	1	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0005	495	3	0	3	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0006	495	3	1	2	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0007	495	2	2	0	0	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0008	495	1	0	0	1	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0009	495	1	0	0	0	0	1	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0010	495	1	0	0	1	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0011	495	1	0	0	1	0	0	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4G_chr1_148477548_148488302	0/0	c0012	495	1	0	0	0	0	1	copy fasta	PPIAL4G	chr1	148477548	148488302
PPIAL4H_chr1_146339006_146349765	1/1	c0001	495	339	56	58	170	14	39	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0002	495	44	12	5	19	1	7	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0003	495	8	8	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0004	495	5	0	0	2	1	2	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0005	495	5	5	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0006	495	5	0	5	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0007	495	2	2	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0008	495	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0009	495	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0010	495	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0011	495	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0012	495	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0013	495	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0014	495	1	1	0	0	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIAL4H_chr1_146339006_146349765	0/0	c0015	495	1	0	0	1	0	0	copy fasta	PPIAL4H	chr1	146339006	146349765
PPIA_chr7_44791681_44808117	1/1	c0001	498	425	96	86	189	14	38	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	c0002	498	2	0	0	1	0	1	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	c0003	498	2	2	0	0	0	0	copy fasta	PPIA	chr7	44791681	44808117
PPIA_chr7_44791681_44808117	0/0	c0004	498	1	0	0	0	0	1	copy fasta	PPIA	chr7	44791681	44808117
PPIB_chr15_64150817_64168022	1/1	c0001	651	316	96	47	113	15	43	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	c0002	651	19	1	9	5	1	3	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	c0003	651	4	0	2	0	0	2	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	c0004	651	1	0	0	1	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	c0005	651	1	1	0	0	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIB_chr15_64150817_64168022	0/0	c0006	651	1	0	0	1	0	0	copy fasta	PPIB	chr15	64150817	64168022
PPIC_chr5_123018250_123041725	1/1	c0001	639	339	80	64	157	10	26	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0002	639	23	2	11	2	3	5	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0003	639	10	8	0	1	0	1	copy fasta	PPIC	chr5	123018250	123041725