JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPIC_chr5_123018250_123041725	0/0	c0004	639	5	5	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0005	639	1	0	0	0	1	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0006	639	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0007	639	1	0	0	1	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0008	639	1	0	1	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPIC_chr5_123018250_123041725	0/0	c0009	639	1	1	0	0	0	0	copy fasta	PPIC	chr5	123018250	123041725
PPID_chr4_158704127_158728396	1/0	c0001	1113	224	55	40	103	4	21	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/1	c0002	1113	72	22	7	31	3	8	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0003	1113	16	15	0	0	0	1	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0004	1113	16	0	1	13	0	2	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0005	1113	7	0	0	0	0	7	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0006	1111	5	0	0	5	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0007	1113	2	0	0	0	2	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0008	1113	2	2	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0009	1113	1	0	0	0	0	1	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0010	1113	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0011	1113	1	1	0	0	0	0	copy fasta	PPID	chr4	158704127	158728396
PPID_chr4_158704127_158728396	0/0	c0012	1113	1	0	0	0	1	0	copy fasta	PPID	chr4	158704127	158728396
PPIE_chr1_39733882_39761769	1/1	c0001	906	431	95	72	200	16	46	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	c0002	906	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	c0003	906	1	0	0	1	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIE_chr1_39733882_39761769	0/0	c0004	906	1	1	0	0	0	0	copy fasta	PPIE	chr1	39733882	39761769
PPIF_chr10_79342469_79360334	1/1	c0001	624	384	81	69	181	13	38	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	c0002	624	12	10	1	0	1	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	c0003	624	8	2	4	0	2	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	c0004	624	2	0	0	2	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	c0005	624	1	0	0	1	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIF_chr10_79342469_79360334	0/0	c0006	624	1	1	0	0	0	0	copy fasta	PPIF	chr10	79342469	79360334
PPIG_chr2_169579351_169646406	0/1	c0001	2265	156	43	19	75	4	14	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	1/0	c0002	2265	151	23	28	78	6	15	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0003	2265	57	24	13	6	4	10	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0004	2265	9	0	2	7	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0005	2265	3	0	0	3	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0006	2265	2	0	0	1	0	1	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0007	2265	2	2	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIG_chr2_169579351_169646406	0/0	c0008	2265	2	2	0	0	0	0	copy fasta	PPIG	chr2	169579351	169646406
PPIH_chr1_42653423_42681758	1/1	c0001	534	299	86	55	105	12	39	copy fasta	PPIH	chr1	42653423	42681758
PPIH_chr1_42653423_42681758	0/0	c0002	534	71	4	5	55	2	5	copy fasta	PPIH	chr1	42653423	42681758
PPIH_chr1_42653423_42681758	0/0	c0003	534	1	0	0	1	0	0	copy fasta	PPIH	chr1	42653423	42681758
PPIH_chr1_42653423_42681758	0/0	c0004	534	1	0	0	1	0	0	copy fasta	PPIH	chr1	42653423	42681758
PPIL1_chr6_36849829_36879803	1/1	c0001	501	315	89	54	130	11	29	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	c0002	501	94	3	21	58	3	9	copy fasta	PPIL1	chr6	36849829	36879803
PPIL1_chr6_36849829_36879803	0/0	c0003	501	1	0	1	0	0	0	copy fasta	PPIL1	chr6	36849829	36879803
PPIL2_chr22_21661012_21702907	1/1	c0001	1563	338	87	60	137	12	40	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0002	1563	17	1	9	0	2	5	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0003	1563	14	0	0	14	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0004	1563	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0005	1563	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0006	1563	2	2	0	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0007	1563	1	0	0	1	0	0	copy fasta	PPIL2	chr22	21661012	21702907