JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPIL2_chr22_21661012_21702907	0/0	c0008	1563	1	0	0	0	0	1	copy fasta	PPIL2	chr22	21661012	21702907
PPIL2_chr22_21661012_21702907	0/0	c0009	1563	1	0	1	0	0	0	copy fasta	PPIL2	chr22	21661012	21702907
PPIL3_chr2_200865907_200894077	1/1	c0001	486	281	53	59	123	10	34	copy fasta	PPIL3	chr2	200865907	200894077
PPIL3_chr2_200865907_200894077	0/0	c0002	486	55	39	9	3	4	0	copy fasta	PPIL3	chr2	200865907	200894077
PPIL4_chr6_149499495_149551043	1/1	c0001	1479	298	88	51	118	6	33	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	c0002	1479	4	0	1	0	0	3	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	c0003	1479	1	0	0	1	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	c0004	1479	1	1	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	c0005	1479	1	0	0	1	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL4_chr6_149499495_149551043	0/0	c0006	1479	1	1	0	0	0	0	copy fasta	PPIL4	chr6	149499495	149551043
PPIL6_chr6_109385215_109445628	1/1	c0001	936	359	78	73	161	14	31	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	c0002	936	26	1	1	24	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	c0003	936	9	9	0	0	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	c0004	936	1	0	0	0	0	1	copy fasta	PPIL6	chr6	109385215	109445628
PPIL6_chr6_109385215_109445628	0/0	c0005	936	1	0	0	1	0	0	copy fasta	PPIL6	chr6	109385215	109445628
PPIP5K1_chr15_43528475_43595208	0/1	c0001	4473	54	1	15	20	4	13	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0002	4473	27	5	7	6	4	5	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0003	4473	12	3	1	6	0	2	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	1/0	c0004	4473	9	0	4	1	1	2	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0005	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0006	4473	1	0	0	1	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0007	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0008	4473	1	0	0	1	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0009	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0010	4473	1	0	1	0	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0011	4473	1	0	0	1	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0012	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0013	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0014	4473	1	1	0	0	0	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0015	4473	1	0	0	0	1	0	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K1_chr15_43528475_43595208	0/0	c0016	4473	1	0	0	0	0	1	copy fasta	PPIP5K1	chr15	43528475	43595208
PPIP5K2_chr5_103115301_103217799	1/0	c0001	3732	144	27	28	67	4	17	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/1	c0002	3732	107	34	14	53	0	5	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0003	3732	8	0	3	0	3	2	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0004	3732	6	6	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0005	3732	4	4	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0006	3732	3	1	1	0	1	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0007	3732	3	2	1	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0008	3732	3	3	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0009	3732	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0010	3732	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0011	3732	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0012	3732	1	0	1	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0013	3732	1	1	0	0	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPIP5K2_chr5_103115301_103217799	0/0	c0014	3732	1	0	0	1	0	0	copy fasta	PPIP5K2	chr5	103115301	103217799
PPL_chr16_4877507_4942148	0/0	c0001	5271	108	4	21	61	5	17	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/1	c0002	5271	54	7	12	23	4	7	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0003	5271	39	0	12	19	0	8	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	1/0	c0004	5271	13	12	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0005	5271	11	0	7	2	1	1	copy fasta	PPL	chr16	4877507	4942148