JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPL_chr16_4877507_4942148	0/0	c0006	5271	11	11	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0007	5271	9	8	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0008	5271	8	8	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0009	5271	7	1	2	2	2	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0010	5271	6	0	0	6	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0011	5271	5	5	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0012	5271	5	0	0	5	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0013	5271	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0014	5271	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0015	5271	3	3	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0016	5271	3	3	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0017	5271	3	0	1	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0018	5271	3	3	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0019	5274	3	3	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0020	5271	3	0	0	3	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0021	5271	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0022	5271	2	1	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0023	5271	2	0	0	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0024	5271	2	0	0	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0025	5271	2	0	0	2	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0026	5271	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0027	5271	2	1	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0028	5271	2	0	1	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0029	5271	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0030	5271	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0031	5271	2	0	1	0	1	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0032	5271	2	2	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0033	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0034	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0035	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0036	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0037	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0038	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0039	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0040	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0041	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0042	5271	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0043	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0044	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0045	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0046	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0047	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0048	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0049	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0050	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0051	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0052	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0053	5271	1	0	0	0	1	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0054	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0055	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148