JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPL_chr16_4877507_4942148	0/0	c0056	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0057	5271	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0058	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0059	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0060	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0061	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0062	5271	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0063	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0064	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0065	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0066	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0067	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0068	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0069	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0070	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0071	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0072	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0073	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0074	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0075	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0076	5271	1	1	0	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0077	5271	1	0	1	0	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0078	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0079	5271	1	0	0	1	0	0	copy fasta	PPL	chr16	4877507	4942148
PPL_chr16_4877507_4942148	0/0	c0080	5271	1	0	0	0	0	1	copy fasta	PPL	chr16	4877507	4942148
PPM1A_chr14_60244221_60304087	1/1	c0001	1149	260	82	56	78	12	30	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	c0002	1149	4	0	0	4	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	c0003	1149	2	2	0	0	0	0	copy fasta	PPM1A	chr14	60244221	60304087
PPM1A_chr14_60244221_60304087	0/0	c0004	1149	2	0	0	0	0	2	copy fasta	PPM1A	chr14	60244221	60304087
PPM1B_chr2_44163875_44236472	1/1	c0001	1440	352	89	64	154	12	31	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	c0002	1440	4	4	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	c0003	1440	1	1	0	0	0	0	copy fasta	PPM1B	chr2	44163875	44236472
PPM1B_chr2_44163875_44236472	0/0	c0004	1440	1	0	0	0	0	1	copy fasta	PPM1B	chr2	44163875	44236472
PPM1D_chr17_60595193_60671280	1/1	c0001	1818	178	58	24	81	7	6	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0002	1818	20	20	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0003	1818	9	9	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0004	1818	3	0	0	3	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0005	1818	2	0	0	2	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0006	1818	1	1	0	0	0	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1D_chr17_60595193_60671280	0/0	c0007	1818	1	0	0	0	1	0	copy fasta	PPM1D	chr17	60595193	60671280
PPM1E_chr17_58750854_58990179	0/0	c0001	2274	186	55	33	69	10	19	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	1/1	c0002	2268	110	20	27	51	1	9	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0003	2280	3	2	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0004	2274	3	1	2	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0005	2268	2	0	0	2	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0006	2274	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0007	2280	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0008	2274	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0009	2274	1	0	0	1	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0010	2268	1	0	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179