JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPM1E_chr17_58750854_58990179	0/0	c0011	2268	1	1	0	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0012	2268	1	0	0	0	1	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1E_chr17_58750854_58990179	0/0	c0013	2268	1	0	1	0	0	0	copy fasta	PPM1E	chr17	58750854	58990179
PPM1F_chr22_21914425_21957848	1/0	c0001	1365	205	66	40	69	7	22	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0002	1365	53	0	1	49	0	3	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0003	1365	31	9	13	1	3	5	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/1	c0004	1365	29	3	9	11	1	4	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0005	1365	8	7	1	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0006	1365	4	3	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0007	1365	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0008	1365	2	0	0	2	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0009	1365	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0010	1365	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0011	1365	1	0	0	0	1	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0012	1365	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0013	1365	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0015	1365	1	1	0	0	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1F_chr22_21914425_21957848	0/0	c0016	1365	1	0	0	1	0	0	copy fasta	PPM1F	chr22	21914425	21957848
PPM1G_chr2_27376199_27414591	1/1	c0001	1641	258	84	58	73	8	33	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	c0002	1641	1	0	0	1	0	0	copy fasta	PPM1G	chr2	27376199	27414591
PPM1G_chr2_27376199_27414591	0/0	c0003	1641	1	0	0	0	0	1	copy fasta	PPM1G	chr2	27376199	27414591
PPM1H_chr12_62638994_62940150	1/1	c0001	1545	215	55	40	92	5	21	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	c0002	1545	33	24	1	4	1	3	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	c0003	1545	1	0	1	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	c0004	1545	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	c0005	1545	1	0	0	1	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1H_chr12_62638994_62940150	0/0	c0006	1545	1	1	0	0	0	0	copy fasta	PPM1H	chr12	62638994	62940150
PPM1J_chr1_112704998_112720332	0/1	c0001	1518	374	73	71	176	14	39	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	1/0	c0002	1518	15	14	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0003	1518	10	1	4	0	2	3	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0004	1518	4	4	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0005	1518	4	0	3	0	0	1	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0006	1518	2	0	0	2	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0007	1518	2	0	0	0	0	2	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0008	1518	2	0	0	2	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0009	1518	2	0	0	1	0	1	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0011	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0012	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0013	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0014	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0015	1518	1	1	0	0	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1J_chr1_112704998_112720332	0/0	c0016	1518	1	0	0	1	0	0	copy fasta	PPM1J	chr1	112704998	112720332
PPM1K_chr4_88252620_88289561	1/1	c0001	1119	328	69	65	142	15	35	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0002	1119	13	11	2	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0003	1119	3	3	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0004	1119	3	0	1	0	1	1	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0005	1119	2	2	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0006	1119	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561