JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PPM1K_chr4_88252620_88289561	0/0	c0007	1119	1	0	0	1	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1K_chr4_88252620_88289561	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	PPM1K	chr4	88252620	88289561
PPM1L_chr3_160751231_161083902	0/0	c0001	1083	203	64	47	70	4	18	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	c0002	1083	1	0	1	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	c0003	1083	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1L_chr3_160751231_161083902	0/0	c0004	1083	1	1	0	0	0	0	copy fasta	PPM1L	chr3	160751231	161083902
PPM1M_chr3_52240759_52255599	1/1	c0001	1380	321	46	68	154	15	36	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0002	1380	51	37	9	1	1	3	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0003	1380	2	2	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0004	1380	1	1	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0005	1380	1	1	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0006	1380	1	1	0	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0007	1380	1	0	1	0	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0008	1380	1	0	0	0	0	1	copy fasta	PPM1M	chr3	52240759	52255599
PPM1M_chr3_52240759_52255599	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	PPM1M	chr3	52240759	52255599
PPM1N_chr19_45493443_45507513	1/1	c0001	1293	343	80	60	153	11	37	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0002	1293	65	0	17	40	2	6	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0003	1293	5	5	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0004	1293	3	0	0	0	0	3	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0005	1293	3	0	3	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0006	1293	3	3	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0007	1293	2	2	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0008	1293	2	1	1	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0009	1293	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0010	1293	1	0	0	0	0	1	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0011	1293	1	1	0	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0012	1293	1	0	0	0	1	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0013	1293	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0014	1293	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0015	1293	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0016	1293	1	0	1	0	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0017	1293	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPM1N_chr19_45493443_45507513	0/0	c0018	1293	1	0	0	1	0	0	copy fasta	PPM1N	chr19	45493443	45507513
PPME1_chr11_74166289_74259703	1/1	c0001	1161	361	93	51	164	14	37	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	c0002	1161	3	3	0	0	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	c0003	1161	2	0	1	1	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	c0004	1161	2	0	0	2	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	c0005	1161	1	0	0	0	0	1	copy fasta	PPME1	chr11	74166289	74259703
PPME1_chr11_74166289_74259703	0/0	c0006	1161	1	0	0	1	0	0	copy fasta	PPME1	chr11	74166289	74259703
PPOX_chr1_161161426_161176220	1/1	c0001	1434	337	72	64	143	16	40	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	c0002	1434	23	0	1	20	2	0	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	c0003	1434	2	0	0	2	0	0	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	c0004	1434	1	0	0	1	0	0	copy fasta	PPOX	chr1	161161426	161176220
PPOX_chr1_161161426_161176220	0/0	c0005	1434	1	0	1	0	0	0	copy fasta	PPOX	chr1	161161426	161176220
PPP1CA_chr11_67393183_67406858	1/1	c0001	993	353	93	69	144	11	34	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CA_chr11_67393183_67406858	0/0	c0002	993	25	3	3	18	1	0	copy fasta	PPP1CA	chr11	67393183	67406858
PPP1CB_chr2_28746830_28807940	1/0	c0001	984	207	37	40	103	8	18	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CB_chr2_28746830_28807940	0/1	c0002	984	159	49	34	49	10	16	copy fasta	PPP1CB	chr2	28746830	28807940
PPP1CC_chr12_110714680_110747891	1/1	c0001	972	260	41	62	103	15	37	copy fasta	PPP1CC	chr12	110714680	110747891
PPP1CC_chr12_110714680_110747891	0/0	c0002	972	74	48	5	11	1	9	copy fasta	PPP1CC	chr12	110714680	110747891